Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00933 ATGAGTAATAAAACCCAAATTACGACCACGTCGGGGCAGCAGCTTCGGAGGCGCCCATGGCCTGGATTGTTGTTCCCTTGTTCTTCCAAGGCTTTGGGGACTTGCTTCGGTGACGCCAATTGCATGGAACAGTTGTTGGTCCACTGCGCCAACGCCATCGAATCCAACGACGCCACTCTCGCCCAACAAATCCTTTGGGTTCTTAACAACATTGCCCCTCCCGATGGCGACTCCAACCAACGCCTCACTTCCGCCTTCCTACGCGCTCTTGTCACACGCGCTGCCAACACTGGCAACTGCAAGATTCTCGCCTCCATCACCACCTCTGCCTTCTCCTCCTCTCTCACCACACACACCTTCTCCCTCATGGACCTCGCCGCCTTTGTCGACTTAACCCCCTGGCACCGCTTTGGCTTCACCGCTGCCAATGCCGCCATTCTCGACGCCATCGACGGTTACTCCGCCGTCCACGTCGTTGATTTCAGCCTGATGCATTGCATGCAAATCCCCACTCTTATAGACGCCATTGCTACTCGTTTCGAGGTCCCCCCTCTACTCAAACTCACAACCGTCGCTGCCGCTGCCGTTAAAGACGCGCCGCCGATGCTGGAGCTGTCGTACGACGAATTAGGTGCGAAATTGGTGAACTTTGCTAGGTCTAGAAACGTGAGTATGGAATTCAGAGTGGTCCCCTCTTGCCATACAGACGGTTTTGCCAATTTAATCGAACAAATCCGAGTGCAACATTTAATTTACGGACCCGAAAATAACGGAGCGCTGGTTTTTAATTGCCACATGCTGCTCCATTACATCCCCGAAGAAACACTAAACCCAAACCCCTCTCCCAGTTTCGACATGTCGTCTTCAGTCCGATCCATGTTTCTCAAAACAATCCGTAGCTTAGATCCAACGATTGTGATTCTAGTAGAGGAAGATGCGGACTTCACGTCCACCGAATTAGTTAGCCGATTGAGATCCGCATTCAATTACCTGTGGATTCCTTACGACTCCATGGATTCGTTTCTTCCTAGGAGCAGCAAGCAGAGGGAATGGTACGAGGCCGACATTTGTTGGAAGATCGAGAATGTAATCGCCCACGAAGGCATCCAGCGAGTTGAAAGATTGGAGCCCAAGGGGCGGTGGGTTCAGCGGATGCGCAACGCCAAATTCCGCGGTGCTCCCTTCGGAGACGAGGCGGTTTCGGAGGTGAAGACGATGCTGGACGAGCATGCGGCGGGATGGGGGTTGAAGAAGGAAGACGACCACCTGGTGCTGACATGGAAAGGACACGACGTCGTATTCGCCACCGCTTGGGTACCTTGCTAA 1326 53.32 MSNKTQITTTSGQQLRRRPWPGLLFPCSSKALGTCFGDANCMEQLLVHCANAIESNDATLAQQILWVLNNIAPPDGDSNQRLTSAFLRALVTRAANTGNCKILASITTSAFSSSLTTHTFSLMDLAAFVDLTPWHRFGFTAANAAILDAIDGYSAVHVVDFSLMHCMQIPTLIDAIATRFEVPPLLKLTTVAAAAVKDAPPMLELSYDELGAKLVNFARSRNVSMEFRVVPSCHTDGFANLIEQIRVQHLIYGPENNGALVFNCHMLLHYIPEETLNPNPSPSFDMSSSVRSMFLKTIRSLDPTIVILVEEDADFTSTELVSRLRSAFNYLWIPYDSMDSFLPRSSKQREWYEADICWKIENVIAHEGIQRVERLEPKGRWVQRMRNAKFRGAPFGDEAVSEVKTMLDEHAAGWGLKKEDDHLVLTWKGHDVVFATAWVPC 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6683243 6684568 + CmaCh03G009330.1 Cma03g00933 290504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00933 441 ProSiteProfiles GRAS family profile. 33 439 IPR005202 -
Cma03g00933 441 Pfam GRAS domain family 42 438 IPR005202 -
Cma03g00933 441 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 14 439 IPR005202 -
Cma03g00933 441 PANTHER SCARECROW-LIKE PROTEIN 32 14 439 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00933 Cma-Chr3:6683243 Cma19g00942 Cma-Chr19:8381174 7.43E-112 dispersed
Cma03g00933 Cma-Chr3:6683243 Cma07g00650 Cma-Chr7:2839388 4.94E-53 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34666 PF03514 GRAS 2.20E-91 CL0063 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00933 - - cmos:111453455 845.114