Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00950 ATGGATTTACACACTTTCCTCTACTCTTTCTTCTCCCCTCTGTTTCTTCTTTTTGCTTTCAACCTCATCACTCGATCTCTTCGACCTCGCAAAAACTTACCGCCGAGTCCGCCATCTCTTCCGGTTATTGGCCATCTTCATCTCTTGAAAAAGCCACTCCATCGAAATTTCCAGAATCTCTCCGCCAAATATGGTCCTGTTATGTCTCTCCGCCTCGGATCTAACCTCGCTGTCGTTGTATCTTCGTCGTCAGCGGTGGAGGAGTGTTTCACTAAAAACGATGTCGTTCTTGCCAACCGTCCTCGTTTGCTAATTGGAAAATACCTCGGCTACAACTACACTACCATGATTGGGGCTTCATACGGTGATCACTGGCGGAACCTCCGCCGAATTGGCGCCATCGAGATCTTCTCTTCATCTCGAATCAACAAATTCGCTGATATCCGGAGGGATGAAGTGAAACGATTAGTGCGGAAACTGTCGCGCAATTCGATCCATCAATATTCGAAAGTAGAAATGCAATCGGCGTTGTCGGAGATGACGTTCAACATCTCGATGAGAATGGCGGCCGGGAAGAGGTATTACGGCGAGGACGTGACGGACAAGGAAGAGGCGAGGAGGTTCAGGGAGTTGATTAAGGAGATTGTGGCGGCAGGAGGAGTATCAAATCCAGGGGATTTTTTCCCCATTCTGAACTGGATCTCGAAGGGGTTCGAGAGGAAATTGATTGAATTGGGGAAGAAAGTGGATGCGTTCTTGCAGGGGCTCATCGATGATCACCGCAGGAAGAAGGAAGAAGGAAGGAACACGATGATCGATCACTTGCTCTCTCTGCAGGAATCGCAACCGGCTGTCTATGACGATCAAATAATCAAAGGATTTATACTGGTGTTACTGACTGCGGGGACCGACACATCGGCCGTGACAGTTGAATGGGCCTTGTCTCATCTATTGAACAATCCTGAAGTGTTAAAGAAGGCAAAAGACGAAATAGACACTCAAATTGGACAAGAACGCCTCGTTGAAGAACCGGACGTGTCCAAACTACCATATCTTCAAGGAATCATCTCTGAAACTCTGCGGCTGACTCCCGCAGCTCCGATGTTGTTGCCCCATTATGCAGCCAATGACTGCACAATATGTGGATACGACGTGCCACGTGACACGATGCTACTAGTCAATGCATGGGCCATACATAGGGATCCAAACGAATGGGAGGATCCCTTAAGTTTCAAACCCGAGAGATACGAAAAGTCAGAAGTCGAGGTACACAAGCTGTTGTCCTTCGGAGTAGGAAGGCGAGCTTGTCCTGGGTCTGCCATGGCGCATAGGATAATGGGTCTAACTTTGGGGGCTCTGATTCAGTGCTTCGAGTGGGAGAGAATTGGAGCAGAAGACTTGGACATGAACGAGAGGGTAGGTGCCACAATGACCAAAATGGTGCCGTTGGAGGCCATGTGCAGAGCTCGTCCCACCGTGGATGGCTGCCTTCTTGACTGA 1500 49.07 MDLHTFLYSFFSPLFLLFAFNLITRSLRPRKNLPPSPPSLPVIGHLHLLKKPLHRNFQNLSAKYGPVMSLRLGSNLAVVVSSSSAVEECFTKNDVVLANRPRLLIGKYLGYNYTTMIGASYGDHWRNLRRIGAIEIFSSSRINKFADIRRDEVKRLVRKLSRNSIHQYSKVEMQSALSEMTFNISMRMAAGKRYYGEDVTDKEEARRFRELIKEIVAAGGVSNPGDFFPILNWISKGFERKLIELGKKVDAFLQGLIDDHRRKKEEGRNTMIDHLLSLQESQPAVYDDQIIKGFILVLLTAGTDTSAVTVEWALSHLLNNPEVLKKAKDEIDTQIGQERLVEEPDVSKLPYLQGIISETLRLTPAAPMLLPHYAANDCTICGYDVPRDTMLLVNAWAIHRDPNEWEDPLSFKPERYEKSEVEVHKLLSFGVGRRACPGSAMAHRIMGLTLGALIQCFEWERIGAEDLDMNERVGATMTKMVPLEAMCRARPTVDGCLLD 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6782028 6784104 + CmaCh03G009500.1 Cma03g00950 290521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00950 499 Gene3D Cytochrome P450 20 489 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma03g00950 499 Pfam Cytochrome P450 34 471 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma03g00950 499 SUPERFAMILY Cytochrome P450 34 490 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma03g00950 499 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 429 438 IPR017972 GO:0005506|GO:0016705
Cma03g00950 499 PRINTS E-class P450 group I signature 61 80 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma03g00950 499 PRINTS E-class P450 group I signature 85 106 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma03g00950 499 PRINTS E-class P450 group I signature 180 198 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma03g00950 499 PRINTS E-class P450 group I signature 290 307 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma03g00950 499 PRINTS E-class P450 group I signature 310 336 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma03g00950 499 PRINTS E-class P450 group I signature 353 371 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma03g00950 499 PRINTS E-class P450 group I signature 394 418 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma03g00950 499 PRINTS E-class P450 group I signature 426 436 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma03g00950 499 PRINTS E-class P450 group I signature 436 459 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma03g00950 499 PANTHER CYTOCHROME P450, FAMILY 81, SUBFAMILY D, POLYPEPTIDE 2-RELATED 7 494 - -
Cma03g00950 499 PRINTS P450 superfamily signature 301 318 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma03g00950 499 PRINTS P450 superfamily signature 354 365 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma03g00950 499 PRINTS P450 superfamily signature 427 436 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma03g00950 499 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 7 494 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00950 Cma-Chr3:6782028 Cma17g01387 Cma-Chr17:9243802 0 dispersed
Cma20g00980 Cma-Chr20:5112338 Cma03g00950 Cma-Chr3:6782028 1.34E-169 dispersed
Cma03g00950 Cma-Chr3:6782028 Cma03g00951 Cma-Chr3:6785337 0 tandem
Cma01g01801 Cma-Chr1:12016730 Cma03g00950 Cma-Chr3:6782028 3.56E-165 wgd
Cma02g00505 Cma-Chr2:2704533 Cma03g00950 Cma-Chr3:6782028 0 wgd
Cma20g00975 Cma-Chr20:5068868 Cma03g00950 Cma-Chr3:6782028 0 wgd
Cma03g00950 Cma-Chr3:6782028 Cma09g00267 Cma-Chr9:1109388 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00950 K13260 - csv:101215449 826.624