Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00963 ATGGCCGTGGACCTCATCTCCCACCCCTACCCTCCTCCCTCCACCACCCACAATATGGAACCCAACGCCGTCCAAGAGGCTGCCTCAGGCCTTCAAAGCGTCGAGAAACTCATCCGATTGCTCTCCAATGCCCAACATCACTCCTTACCCACCTCTACTCAATCCCCCAATTCCACTTCCAATTCTCCCACCGATTTCCCCACCGACTGCCGCGCCGCCGCCGATGCCGCCGTCTCCAAGTTCAAAAAGGTTATTTCTCTCCTTGGCCGGAGCCGCCTCGGCCACGCTCGCTTCAGAAGAGCTCCTCTCCCTCTTCCTCAACCCCAAGTCCTCTACGCCACTCCCATCCAGCAGATCCCACCCCATCGCGATCTCCCCGCCGGCGACCTCGACAACAACGACTCTCTCACTACTACTCTCAATTTCTCTTATTCCTCCGCCCATAACTCCTTCATCTCCTCCTTGACCGGCGACTGTGATACCAAGCAGCCTTCCTCCTCCTCGCCTTTTCAGATTATCAACCTCTCCCAAGTCTCCTCCGCCGGGAAACCCCCCCTCTCTACTTCTTCCCTTAAGAGAAAGTGTAGCTCCGACAACTTGGGATCCGGCAAGTGCGGCGCTGCTTCTTCCTCCGGCCGATGCCACTGTTCCAAGAAGAGAAAACTGAGAGTGAAGAGGGTGATGAGGGTTCCGGCGATAAGCTTGAAAATGGCGGATATCCCACCGGACGACTATTCATGGAGGAAATATGGTCAAAAGCCCATTAAAGGCTCTCCACATCCCAGGGGTTATTACAAGTGTAGCAGCGTGAGAGGTTGCCCAGCCCGGAAACACGTAGAACGTGCCGGAGACGATCCGGCGATGCTAGTGGTGACCTACGAAGGAGAACACAATCACACTCTCTCTCTGCCCCAACCCTCCACTCTCATCCTCGAGTCCTCTTAA 945 55.87 MAVDLISHPYPPPSTTHNMEPNAVQEAASGLQSVEKLIRLLSNAQHHSLPTSTQSPNSTSNSPTDFPTDCRAAADAAVSKFKKVISLLGRSRLGHARFRRAPLPLPQPQVLYATPIQQIPPHRDLPAGDLDNNDSLTTTLNFSYSSAHNSFISSLTGDCDTKQPSSSSPFQIINLSQVSSAGKPPLSTSSLKRKCSSDNLGSGKCGAASSSGRCHCSKKRKLRVKRVMRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERAGDDPAMLVVTYEGEHNHTLSLPQPSTLILESS 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6836165 6838258 + CmaCh03G009630.1 Cma03g00963 290534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00963 314 Pfam WRKY DNA -binding domain 243 299 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma03g00963 314 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 14 314 IPR044810 GO:0003700
Cma03g00963 314 Pfam Plant zinc cluster domain 192 239 IPR018872 -
Cma03g00963 314 SMART WRKY_cls 241 301 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma03g00963 314 MobiDBLite consensus disorder prediction 47 66 - -
Cma03g00963 314 Gene3D WRKY domain 228 302 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma03g00963 314 PANTHER WRKY TRANSCRIPTION FACTOR 7-RELATED 14 314 - -
Cma03g00963 314 SUPERFAMILY WRKY DNA-binding domain 238 300 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma03g00963 314 ProSiteProfiles WRKY domain profile. 236 302 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00963 Cma20g00968 CCT
Cma02g00489 Cma03g00963 CCT
Cma02g00489 Cma03g00963 ECH
Cma03g00963 Cma20g00968 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00489 Cma-Chr2:2585531 Cma03g00963 Cma-Chr3:6836165 1.71E-106 dispersed
Cma03g00963 Cma-Chr3:6836165 Cma09g00530 Cma-Chr9:2358729 1.01E-67 dispersed
Cma01g01820 Cma-Chr1:12075582 Cma03g00963 Cma-Chr3:6836165 2.29E-106 wgd
Cma20g00968 Cma-Chr20:4913335 Cma03g00963 Cma-Chr3:6836165 7.45E-110 wgd
Cma03g00963 Cma-Chr3:6836165 Cma07g00689 Cma-Chr7:3032530 1.79E-34 wgd
Cma03g00963 Cma-Chr3:6836165 Cma09g00254 Cma-Chr9:1067795 4.71E-108 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34668 PF03106 WRKY 3.50E-26 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00963 - - csv:101214001 446.817