Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma03g00963 | ATGGCCGTGGACCTCATCTCCCACCCCTACCCTCCTCCCTCCACCACCCACAATATGGAACCCAACGCCGTCCAAGAGGCTGCCTCAGGCCTTCAAAGCGTCGAGAAACTCATCCGATTGCTCTCCAATGCCCAACATCACTCCTTACCCACCTCTACTCAATCCCCCAATTCCACTTCCAATTCTCCCACCGATTTCCCCACCGACTGCCGCGCCGCCGCCGATGCCGCCGTCTCCAAGTTCAAAAAGGTTATTTCTCTCCTTGGCCGGAGCCGCCTCGGCCACGCTCGCTTCAGAAGAGCTCCTCTCCCTCTTCCTCAACCCCAAGTCCTCTACGCCACTCCCATCCAGCAGATCCCACCCCATCGCGATCTCCCCGCCGGCGACCTCGACAACAACGACTCTCTCACTACTACTCTCAATTTCTCTTATTCCTCCGCCCATAACTCCTTCATCTCCTCCTTGACCGGCGACTGTGATACCAAGCAGCCTTCCTCCTCCTCGCCTTTTCAGATTATCAACCTCTCCCAAGTCTCCTCCGCCGGGAAACCCCCCCTCTCTACTTCTTCCCTTAAGAGAAAGTGTAGCTCCGACAACTTGGGATCCGGCAAGTGCGGCGCTGCTTCTTCCTCCGGCCGATGCCACTGTTCCAAGAAGAGAAAACTGAGAGTGAAGAGGGTGATGAGGGTTCCGGCGATAAGCTTGAAAATGGCGGATATCCCACCGGACGACTATTCATGGAGGAAATATGGTCAAAAGCCCATTAAAGGCTCTCCACATCCCAGGGGTTATTACAAGTGTAGCAGCGTGAGAGGTTGCCCAGCCCGGAAACACGTAGAACGTGCCGGAGACGATCCGGCGATGCTAGTGGTGACCTACGAAGGAGAACACAATCACACTCTCTCTCTGCCCCAACCCTCCACTCTCATCCTCGAGTCCTCTTAA | 945 | 55.87 | MAVDLISHPYPPPSTTHNMEPNAVQEAASGLQSVEKLIRLLSNAQHHSLPTSTQSPNSTSNSPTDFPTDCRAAADAAVSKFKKVISLLGRSRLGHARFRRAPLPLPQPQVLYATPIQQIPPHRDLPAGDLDNNDSLTTTLNFSYSSAHNSFISSLTGDCDTKQPSSSSPFQIINLSQVSSAGKPPLSTSSLKRKCSSDNLGSGKCGAASSSGRCHCSKKRKLRVKRVMRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERAGDDPAMLVVTYEGEHNHTLSLPQPSTLILESS | 314 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 6836165 | 6838258 | + | CmaCh03G009630.1 | Cma03g00963 | 290534 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma03g00963 | 314 | Pfam | WRKY DNA -binding domain | 243 | 299 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma03g00963 | 314 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 14 | 314 | IPR044810 | GO:0003700 | |
Cma03g00963 | 314 | Pfam | Plant zinc cluster domain | 192 | 239 | IPR018872 | - | |
Cma03g00963 | 314 | SMART | WRKY_cls | 241 | 301 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma03g00963 | 314 | MobiDBLite | consensus disorder prediction | 47 | 66 | - | - | |
Cma03g00963 | 314 | Gene3D | WRKY domain | 228 | 302 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cma03g00963 | 314 | PANTHER | WRKY TRANSCRIPTION FACTOR 7-RELATED | 14 | 314 | - | - | |
Cma03g00963 | 314 | SUPERFAMILY | WRKY DNA-binding domain | 238 | 300 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cma03g00963 | 314 | ProSiteProfiles | WRKY domain profile. | 236 | 302 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma03g00963 | Cma20g00968 | CCT | |
Cma02g00489 | Cma03g00963 | CCT | |
Cma02g00489 | Cma03g00963 | ECH | |
Cma03g00963 | Cma20g00968 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma02g00489 | Cma-Chr2:2585531 | Cma03g00963 | Cma-Chr3:6836165 | 1.71E-106 | dispersed | |
Cma03g00963 | Cma-Chr3:6836165 | Cma09g00530 | Cma-Chr9:2358729 | 1.01E-67 | dispersed | |
Cma01g01820 | Cma-Chr1:12075582 | Cma03g00963 | Cma-Chr3:6836165 | 2.29E-106 | wgd | |
Cma20g00968 | Cma-Chr20:4913335 | Cma03g00963 | Cma-Chr3:6836165 | 7.45E-110 | wgd | |
Cma03g00963 | Cma-Chr3:6836165 | Cma07g00689 | Cma-Chr7:3032530 | 1.79E-34 | wgd | |
Cma03g00963 | Cma-Chr3:6836165 | Cma09g00254 | Cma-Chr9:1067795 | 4.71E-108 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34668 | PF03106 | WRKY | 3.50E-26 | CL0274 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma03g00963 | - | - | csv:101214001 | 446.817 |