Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00965 ATGGACGACATAACGAGCTACTACGCGCCACCTCCGCAACCGCAACCACCGTCGCAGCCTTCTGGTCTTGAGGCGCCTCACTATCCCTATTACCAGGTGCCTCCTCCTCCTTCTTCAGCACCGTCGTCTCAGCATTACCTTGCTCAACACCCGCCAACCTTCGCTTCCTATGGCTTACCTTTTTTACCTCACGCAGCCTCCATTAATGAGGTCCGAACCCTATTCATAGCTGGCCTTCCTGAAGATGTCAAGCCCCGAGAAATTTACAATCTCTTCCGGGAGTTTCCGGGCTACGAGTCCTCTCATCTTCGGAGCCCCACGCAGACGACCCAGCCATTTGCATTTGCTGTATTCTCGGACCAGCAGTCTGCCGTAGGTGCAATGCATGCTGTAAATAATAGCTGTTCTAAAAGTGCGCTACTTAAGGGGATGGTGTTTGATCTTGAGAAGCAGTCAGTACTATATGTTGATTTAGCTAAATCCAATTCAAGATCAAAACGGATGAGGACAGAGGATGAAAGATATGGATCGGACAAGAAAGCTAAAGTATCTATCTTTTCAAGGAGAACTCCTGATCCTGGTCTTGGCAGCACTCACATGTCTGGAATGGGTAATTCTGCTTACAACACGATTGGTTATCCATCTGCACAAAGCCATGGAAGCTTTGATAACAAAACTGTAAATGATACAGTGGCTGCAAATGTGACTCCTCAAAATCCCCCATGTCCAACACTTTTTGTGGCAAATCTAGGGCCAAGTTGCACAGAGCAAGAACTTATTCAAATTTTTTCTAGATGCCCGGGGTTTTTAAAACTAAAGATGCAGAGCACGTATGGGGCCCCAGTTGCTTTTGTTGATTTTCAGGATACCGCCTGTTCAACTGGAGCACTGAACCATCTGCAAGGCTCAATTCTGTACTCATCACCTCCTGGGGAGGGCATGCGATTGGACTACAGTAGCGAAGCTCATCAATCGCATCCCCTTTTTGTTCCTTTTCATGAAGATTCAGATTCTGGGTTAGGCCAAGGGAGAGGTGAGATTTGGAATTGGAGGGCCATGGAGGGCGGAGGAGAGGGAGGTCGGGAGGGTACCAGAAAAAGAGGGGTCCACAATCAGAAGCTGTACAAAGGGATAAGGATGAGGAAGTGGGGGAAGTGGGTGGCTGAGATTCGAGAACCCAATAAGCGCTCCAGGATTTGGCTCGGCTCTTACTCTTCTCCAGTGGCCGCTGCCAGGGCCTACGATACCGCTCTGTATTACCTCAGAGGCCCCTCCGCCAGGCTTAATTTTCCCGACTTGTTAGCCGGGGAAGGACGCGGAATTAGCGGCGGTGGATGTGGCGACATGTCGGCGGCTACTATACGGAAGAAAGCCACGGAGGTGGGCGCACGAGTGGATGCTCTGGAGAGTTCCTTAGGTCATCACCAACACAATCACAACAATCGGAACCATCATTCCCATGCATCGGCGTCTCCGCCAGAGACGAAAGTCTGCAGCGGGTTTTTGGATCGGATGGATTTGAACAAATTACCCGACCCGGAAGAAGATGATGAAGAAGGAGATGGGGAGTTCGAGTGGGAGAGACAATGA 1590 50.06 MDDITSYYAPPPQPQPPSQPSGLEAPHYPYYQVPPPPSSAPSSQHYLAQHPPTFASYGLPFLPHAASINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSDQQSAVGAMHAVNNSCSKSALLKGMVFDLEKQSVLYVDLAKSNSRSKRMRTEDERYGSDKKAKVSIFSRRTPDPGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNKTVNDTVAANVTPQNPPCPTLFVANLGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSPPGEGMRLDYSSEAHQSHPLFVPFHEDSDSGLGQGRGEIWNWRAMEGGGEGGREGTRKRGVHNQKLYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPVAAARAYDTALYYLRGPSARLNFPDLLAGEGRGISGGGCGDMSAATIRKKATEVGARVDALESSLGHHQHNHNNRNHHSHASASPPETKVCSGFLDRMDLNKLPDPEEDDEEGDGEFEWERQ 529
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6844657 6852525 + CmaCh03G009650.1 Cma03g00965 290536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00965 529 MobiDBLite consensus disorder prediction 512 529 - -
Cma03g00965 529 Gene3D AP2/ERF domain 374 432 IPR036955 GO:0003700|GO:0006355
Cma03g00965 529 SMART rrm1_1 244 313 IPR000504 GO:0003723
Cma03g00965 529 SMART rrm1_1 73 149 IPR000504 GO:0003723
Cma03g00965 529 Gene3D - 231 320 IPR012677 -
Cma03g00965 529 Gene3D - 68 171 IPR012677 -
Cma03g00965 529 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 74 136 IPR000504 GO:0003723
Cma03g00965 529 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 245 307 IPR000504 GO:0003723
Cma03g00965 529 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 243 321 IPR000504 GO:0003723
Cma03g00965 529 MobiDBLite consensus disorder prediction 9 41 - -
Cma03g00965 529 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 72 161 IPR000504 GO:0003723
Cma03g00965 529 MobiDBLite consensus disorder prediction 1 45 - -
Cma03g00965 529 PRINTS Ethylene responsive element binding protein signature 413 433 IPR001471 GO:0003700|GO:0006355
Cma03g00965 529 PRINTS Ethylene responsive element binding protein signature 375 386 IPR001471 GO:0003700|GO:0006355
Cma03g00965 529 Pfam AP2 domain 375 423 IPR001471 GO:0003700|GO:0006355
Cma03g00965 529 SUPERFAMILY RNA-binding domain, RBD 71 307 IPR035979 GO:0003676
Cma03g00965 529 CDD RRM_scw1_like 241 319 - -
Cma03g00965 529 SUPERFAMILY DNA-binding domain 374 432 IPR016177 GO:0003677
Cma03g00965 529 ProSiteProfiles AP2/ERF domain profile. 374 431 IPR001471 GO:0003700|GO:0006355
Cma03g00965 529 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 1 316 - -
Cma03g00965 529 MobiDBLite consensus disorder prediction 474 529 - -
Cma03g00965 529 CDD AP2 373 433 IPR001471 GO:0003700|GO:0006355
Cma03g00965 529 SMART rav1_2 374 437 IPR001471 GO:0003700|GO:0006355
Cma03g00965 529 PANTHER RNA-BINDING PROTEIN-RELATED 1 316 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00965 Cma07g00692 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00965 Cma-Chr3:6844657 Cma07g00693 Cma-Chr7:3047127 6.95E-86 dispersed
Cma08g00764 Cma-Chr8:4586112 Cma03g00965 Cma-Chr3:6844657 2.24E-45 transposed
Cma01g01826 Cma-Chr1:12101981 Cma03g00965 Cma-Chr3:6844657 3.10E-44 wgd
Cma12g00563 Cma-Chr12:2940087 Cma03g00965 Cma-Chr3:6844657 7.44E-09 wgd
Cma02g00525 Cma-Chr2:2895061 Cma03g00965 Cma-Chr3:6844657 1.51E-48 wgd
Cma03g00965 Cma-Chr3:6844657 Cma05g00169 Cma-Chr5:717107 3.00E-41 wgd
Cma03g00965 Cma-Chr3:6844657 Cma07g00692 Cma-Chr7:3040726 5.77E-12 wgd
Cma03g00965 Cma-Chr3:6844657 Cma09g00246 Cma-Chr9:1037948 2.93E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34669 PF00076 RRM_1 1.00E-08 CL0221 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00965 - - mcha:111005791 550.436