Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00966 ATGTGGGATCTGAACGACTGCCCTGATGTGAGGGAGGGGGATGAATCCGAAGCCTGTTCCTCCGCCAAGACCTCCATCGAGGGAGACGGGGATGATGACAAACGGAAAAGGGTGGGATCGGCTTCCAATTCCAGTTGTTCGGCTGCTGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGACTTGGAGGAGGAAGAAGAGGAGGAGGAAGGATCCGATGAGGTATTGGGCTCCATGGTCATGCAAATTGACACACAAACCCCAAGCCCCGTTACTCGCCAGTTTTTCCCACTTGAAGACACTGAAATCCCACCTCCCCTTCCACTTCCAACGACTGATTCCGCCTTCCCTCGGGCTCACTGGGTTGGGGTCAAATTTGGCCATCCCGATCCCAATAATAACTCCATCAACCCCAATGACCTCTCCCACCCCATTAAGAAGAGCCGCCGAGGCCCAAGGTCCCGTAGCTCCCAGTATCGCGGGGTCACTTTCTACCGGAGAACCGGCCGCTGGGAGTCTCATATTTGGGATTGTGGAAAGCAGGTTTATCTCGGTGGATTCGATACGGCACATGCAGCTGCTCGTGCTTACGATAGAGCGGCCATTAAATTTCGAGGAGTGGAAGCGGACATAAACTTCAGCATCGAAGATTACGAGGACGACTTAAAACAGATGGGTAATCTAACAAAGGAGGAATTTGTGCATGTTCTTCGCCGACAAAGCACTGGGTTTCCCAGAGGAAGCTCCAAGTATAGAGGTGTAACACTTCACAAGTGTGGAAGATGGGAGGCTCGAATGGGCCAATTTCTTGGCAAAAAGTATGTTTATCTGGGTTTGTTTGATACCGAGATCGAAGCCGCAAGGGCTTATGATAAAGCTGCAATCAAGTGTAATGGCAAAGAAGCTGTCACCAATTTCGATCCCAGCATTTACGAGAGTGAGCTGAATCCGACAACTGACTCAACTACCAATTTAGCGGACCACAGTCTTGATTTGCGTCTGGGAAATTCAAGCTCAAAGCAAAATGACAGCCCAAATGGTTCCTTAGATCCGCACCATTCTTCTTCAGCTTCTCTACCGATGGAAGCTGATTGGCAACGTAGTCAAGGATTTAGGCCTCCGCAGCTAAATTTGCTGCAAGAATCAAGCGGCGGAGGAGGTAGTGGAAACAAAAATTACAATAATGCACAGAGAGGAAATACTAATAGGTACCTGGAGAGTGAAACTATGCAGCTGCTAAGCCAAACACACATTCAGTCTCCAATTTCCTTTGAAATGCAAAGACATGGGCAGTTCAGGCGGCAGGCGGGTGGTGCAGATCAGCCCCACTCCCAGATATTGCTTCACAATCAAAATCATCCAACCTTCAATTATCAAATTCAGTTTCCGGGCAGCAGTAATGGAGGCCGAATAATAGGAAGTGATCTATCACTATCTCTAAGTGATCATCAGAATCAAATTGTTGAATCGGGGCCATCGCAAGTTCTTACAACTGCTGCAGCATCATCAGGATTCTCTCCCCAGATTAGAGCTTCTAAGAATTGGCTGCACAAGAATGGGTTTCATTGTCTCATTAGACCCTCCTAA 1587 48.77 MWDLNDCPDVREGDESEACSSAKTSIEGDGDDDKRKRVGSASNSSCSAAEEEEEEEEEEEDLEEEEEEEEGSDEVLGSMVMQIDTQTPSPVTRQFFPLEDTEIPPPLPLPTTDSAFPRAHWVGVKFGHPDPNNNSINPNDLSHPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSIEDYEDDLKQMGNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYESELNPTTDSTTNLADHSLDLRLGNSSSKQNDSPNGSLDPHHSSSASLPMEADWQRSQGFRPPQLNLLQESSGGGGSGNKNYNNAQRGNTNRYLESETMQLLSQTHIQSPISFEMQRHGQFRRQAGGADQPHSQILLHNQNHPTFNYQIQFPGSSNGGRIIGSDLSLSLSDHQNQIVESGPSQVLTTAAASSGFSPQIRASKNWLHKNGFHCLIRPS 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6855496 6858841 + CmaCh03G009660.1 Cma03g00966 290537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00966 528 SUPERFAMILY DNA-binding domain 249 309 IPR016177 GO:0003677
Cma03g00966 528 MobiDBLite consensus disorder prediction 48 74 - -
Cma03g00966 528 ProSiteProfiles AP2/ERF domain profile. 158 214 IPR001471 GO:0003700|GO:0006355
Cma03g00966 528 Gene3D AP2/ERF domain 157 216 IPR036955 GO:0003700|GO:0006355
Cma03g00966 528 Gene3D AP2/ERF domain 249 308 IPR036955 GO:0003700|GO:0006355
Cma03g00966 528 MobiDBLite consensus disorder prediction 1 74 - -
Cma03g00966 528 SMART rav1_2 158 220 IPR001471 GO:0003700|GO:0006355
Cma03g00966 528 SMART rav1_2 250 313 IPR001471 GO:0003700|GO:0006355
Cma03g00966 528 MobiDBLite consensus disorder prediction 333 363 - -
Cma03g00966 528 Coils Coil 46 75 - -
Cma03g00966 528 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 526 - -
Cma03g00966 528 MobiDBLite consensus disorder prediction 127 158 - -
Cma03g00966 528 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 526 - -
Cma03g00966 528 MobiDBLite consensus disorder prediction 1 18 - -
Cma03g00966 528 PRINTS Ethylene responsive element binding protein signature 251 262 IPR001471 GO:0003700|GO:0006355
Cma03g00966 528 PRINTS Ethylene responsive element binding protein signature 289 309 IPR001471 GO:0003700|GO:0006355
Cma03g00966 528 MobiDBLite consensus disorder prediction 375 398 - -
Cma03g00966 528 ProSiteProfiles AP2/ERF domain profile. 250 307 IPR001471 GO:0003700|GO:0006355
Cma03g00966 528 CDD AP2 249 309 IPR001471 GO:0003700|GO:0006355
Cma03g00966 528 SUPERFAMILY DNA-binding domain 157 215 IPR016177 GO:0003677
Cma03g00966 528 CDD AP2 158 213 IPR001471 GO:0003700|GO:0006355
Cma03g00966 528 Pfam AP2 domain 158 206 IPR001471 GO:0003700|GO:0006355
Cma03g00966 528 Pfam AP2 domain 249 298 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00966 Cma07g00694 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00966 Cma-Chr3:6855496 Cma20g00457 Cma-Chr20:2186182 2.05E-102 dispersed
Cma02g00523 Cma-Chr2:2878935 Cma03g00966 Cma-Chr3:6855496 2.08E-126 transposed
Cma03g00966 Cma-Chr3:6855496 Cma07g00694 Cma-Chr7:3053919 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34670 PF00847 AP2 3.70E-10 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00966 K09284 - csv:101214724 676.781