Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma03g00971 | ATGTCTGACCACAAATCAGGCTCCATGACCGACCAGCTCTCCAAGCAGACTTCTATTTTTGGCCTACGCTTGTGGGTTGTTCTTGGGGTTTGTGTAGGAGCAGCTTTCGTGCTCTTTCTGTTTCTTATTTCTCTTTGGATCGCCTCTAAACGCTCTCGCAAGAACATTTCTCACAAACCCACAATTCCAATCGTCTCCAAAGAAATCCAAGAGATCAGAATCGAGCAGCCCCTCGCTCAAAACCAAGAAAATAAGCCTAGTAGTAGAGCCCATTTTCAGGTCGAGCCGGAAGTAATCCCCGGAGTTGAGCGCCAAGCGTTGCTTTCGTTGCCTCAGGACGAAGAGCGAGTGAACAGGATTCATATTGAGATCGGGAAGGATCATAGGATTTCATATCCTGAGCGCCTAGGTCGGTCGTCTTCCTCGCACGGCAGTGGAGAGGGCCGATGTGGTGGTGATCAGTTGCCTATGGTGGTGCCTGAAGTTTCCCATTTGGGTTGGGGGCATTGGTACACTCTCAGAGAGCTCGAAGCTTCCACTAACGGCTTCGCCCCCGATAATGTAATCGGTGAGGGTGGGTATGGAATTGTTTATCATGGCATATTGGAGGATGGAACTCAGGTTGCTGTTAAGAATTTACTAAACAATAGGGGACAAGCCGAGAAGGAGTTTAAAGTTGAAGTTGAAGCAATTGGACGAGTCAGACACAAGAACCTAGTTAGATTACTTGGATACTGTGCTGAAGGTGCTCACAGGATGCTTGTATATGAGTACATAAATAATGGAAACTTGGAACAATGGCTTCATGGGGATGTGGGATCTTTCAGCCCTCTTACCTGGGAGATTAGAATGAATATCATTCTTGGAACCGCTAAAGGGCTAGCTTATCTTCACGAAGGATTGGAACCAAAGGTTGTTCACCGGGATATCAAATCAAGCAATATATTACTCGATAAGCAATGGAATTCCAAGGTTTCAGATTTTGGGCTTGCAAAGCTACTATGCTCTGATAATAGCTATATCACAACTCGAGTCATGGGAACATTTGGCTATGTAGCGCCAGAATATGCAAGTACGGGGATGCTAAATGAAAGAAGTGATGTGTATAGTTTTGGAATACTCGTTATGGAAATAATCTCAGGAAGGAGCCCTGTCGATTATGGTCGTCCTCCAGATGAGGTACACTTGATCGATTGGCTTAAGAGATTGGTTAGTAACCGTAACCCGGAGGGCGTATTGGATCCAAAGCTTTCTGAAAAGCCTACTTCAAGAGCATTAAAGCGGGCTCTTCTTGTTGCATTACGCTGTGTGGACCCAAATGCTCAGAAGCGGCCAAAAATGGGACACATTATTCATATGCTTGAAGCTGAAGAGGCTACCTTAAAAGGGGATCGCAAAACTGGAAAGAACCCAGAGAACTCGCATGCAGACAATGTCAAGGATGGTTTAAGTGAAAGGCAGGCGATAGAATTAGGCGAAACCAACGTGGATGAACAACGAGCTACGTGA | 1509 | 45.73 | MSDHKSGSMTDQLSKQTSIFGLRLWVVLGVCVGAAFVLFLFLISLWIASKRSRKNISHKPTIPIVSKEIQEIRIEQPLAQNQENKPSSRAHFQVEPEVIPGVERQALLSLPQDEERVNRIHIEIGKDHRISYPERLGRSSSSHGSGEGRCGGDQLPMVVPEVSHLGWGHWYTLRELEASTNGFAPDNVIGEGGYGIVYHGILEDGTQVAVKNLLNNRGQAEKEFKVEVEAIGRVRHKNLVRLLGYCAEGAHRMLVYEYINNGNLEQWLHGDVGSFSPLTWEIRMNIILGTAKGLAYLHEGLEPKVVHRDIKSSNILLDKQWNSKVSDFGLAKLLCSDNSYITTRVMGTFGYVAPEYASTGMLNERSDVYSFGILVMEIISGRSPVDYGRPPDEVHLIDWLKRLVSNRNPEGVLDPKLSEKPTSRALKRALLVALRCVDPNAQKRPKMGHIIHMLEAEEATLKGDRKTGKNPENSHADNVKDGLSERQAIELGETNVDEQRAT | 502 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 6874473 | 6877056 | + | CmaCh03G009710.1 | Cma03g00971 | 290542 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma03g00971 | 502 | CDD | STKc_IRAK | 189 | 455 | - | - | |
Cma03g00971 | 502 | ProSitePatterns | Protein kinases ATP-binding region signature. | 189 | 211 | IPR017441 | GO:0005524 | |
Cma03g00971 | 502 | Gene3D | Phosphorylase Kinase; domain 1 | 164 | 258 | - | - | |
Cma03g00971 | 502 | SMART | serkin_6 | 183 | 454 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma03g00971 | 502 | Coils | Coil | 502 | 502 | - | - | |
Cma03g00971 | 502 | Gene3D | Transferase(Phosphotransferase) domain 1 | 259 | 470 | - | - | |
Cma03g00971 | 502 | Pfam | Protein kinase domain | 186 | 452 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma03g00971 | 502 | ProSiteProfiles | Protein kinase domain profile. | 183 | 461 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma03g00971 | 502 | PANTHER | RECEPTOR-LIKE KINASE PLANT | 1 | 495 | - | - | |
Cma03g00971 | 502 | SUPERFAMILY | Protein kinase-like (PK-like) | 164 | 455 | IPR011009 | - | |
Cma03g00971 | 502 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 305 | 317 | IPR008271 | GO:0004672|GO:0006468 | |
Cma03g00971 | 502 | PANTHER | OS01G0323000 PROTEIN | 1 | 495 | - | - | |
Cma03g00971 | 502 | MobiDBLite | consensus disorder prediction | 462 | 502 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma03g00971 | Cma07g00696 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma03g00971 | Cma-Chr3:6874473 | Cma06g01080 | Cma-Chr6:7267301 | 0 | dispersed | |
Cma18g01268 | Cma-Chr18:9855086 | Cma03g00971 | Cma-Chr3:6874473 | 4.37E-57 | dispersed | |
Cma12g00558 | Cma-Chr12:2910366 | Cma03g00971 | Cma-Chr3:6874473 | 5.11E-64 | wgd | |
Cma03g00971 | Cma-Chr3:6874473 | Cma05g00175 | Cma-Chr5:740818 | 0 | wgd | |
Cma03g00971 | Cma-Chr3:6874473 | Cma07g00696 | Cma-Chr7:3064864 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68429 | PF00069 | Pkinase | 1.30E-46 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma03g00971 | - | - | cmax:111497422 | 921.383 |