Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00971 ATGTCTGACCACAAATCAGGCTCCATGACCGACCAGCTCTCCAAGCAGACTTCTATTTTTGGCCTACGCTTGTGGGTTGTTCTTGGGGTTTGTGTAGGAGCAGCTTTCGTGCTCTTTCTGTTTCTTATTTCTCTTTGGATCGCCTCTAAACGCTCTCGCAAGAACATTTCTCACAAACCCACAATTCCAATCGTCTCCAAAGAAATCCAAGAGATCAGAATCGAGCAGCCCCTCGCTCAAAACCAAGAAAATAAGCCTAGTAGTAGAGCCCATTTTCAGGTCGAGCCGGAAGTAATCCCCGGAGTTGAGCGCCAAGCGTTGCTTTCGTTGCCTCAGGACGAAGAGCGAGTGAACAGGATTCATATTGAGATCGGGAAGGATCATAGGATTTCATATCCTGAGCGCCTAGGTCGGTCGTCTTCCTCGCACGGCAGTGGAGAGGGCCGATGTGGTGGTGATCAGTTGCCTATGGTGGTGCCTGAAGTTTCCCATTTGGGTTGGGGGCATTGGTACACTCTCAGAGAGCTCGAAGCTTCCACTAACGGCTTCGCCCCCGATAATGTAATCGGTGAGGGTGGGTATGGAATTGTTTATCATGGCATATTGGAGGATGGAACTCAGGTTGCTGTTAAGAATTTACTAAACAATAGGGGACAAGCCGAGAAGGAGTTTAAAGTTGAAGTTGAAGCAATTGGACGAGTCAGACACAAGAACCTAGTTAGATTACTTGGATACTGTGCTGAAGGTGCTCACAGGATGCTTGTATATGAGTACATAAATAATGGAAACTTGGAACAATGGCTTCATGGGGATGTGGGATCTTTCAGCCCTCTTACCTGGGAGATTAGAATGAATATCATTCTTGGAACCGCTAAAGGGCTAGCTTATCTTCACGAAGGATTGGAACCAAAGGTTGTTCACCGGGATATCAAATCAAGCAATATATTACTCGATAAGCAATGGAATTCCAAGGTTTCAGATTTTGGGCTTGCAAAGCTACTATGCTCTGATAATAGCTATATCACAACTCGAGTCATGGGAACATTTGGCTATGTAGCGCCAGAATATGCAAGTACGGGGATGCTAAATGAAAGAAGTGATGTGTATAGTTTTGGAATACTCGTTATGGAAATAATCTCAGGAAGGAGCCCTGTCGATTATGGTCGTCCTCCAGATGAGGTACACTTGATCGATTGGCTTAAGAGATTGGTTAGTAACCGTAACCCGGAGGGCGTATTGGATCCAAAGCTTTCTGAAAAGCCTACTTCAAGAGCATTAAAGCGGGCTCTTCTTGTTGCATTACGCTGTGTGGACCCAAATGCTCAGAAGCGGCCAAAAATGGGACACATTATTCATATGCTTGAAGCTGAAGAGGCTACCTTAAAAGGGGATCGCAAAACTGGAAAGAACCCAGAGAACTCGCATGCAGACAATGTCAAGGATGGTTTAAGTGAAAGGCAGGCGATAGAATTAGGCGAAACCAACGTGGATGAACAACGAGCTACGTGA 1509 45.73 MSDHKSGSMTDQLSKQTSIFGLRLWVVLGVCVGAAFVLFLFLISLWIASKRSRKNISHKPTIPIVSKEIQEIRIEQPLAQNQENKPSSRAHFQVEPEVIPGVERQALLSLPQDEERVNRIHIEIGKDHRISYPERLGRSSSSHGSGEGRCGGDQLPMVVPEVSHLGWGHWYTLRELEASTNGFAPDNVIGEGGYGIVYHGILEDGTQVAVKNLLNNRGQAEKEFKVEVEAIGRVRHKNLVRLLGYCAEGAHRMLVYEYINNGNLEQWLHGDVGSFSPLTWEIRMNIILGTAKGLAYLHEGLEPKVVHRDIKSSNILLDKQWNSKVSDFGLAKLLCSDNSYITTRVMGTFGYVAPEYASTGMLNERSDVYSFGILVMEIISGRSPVDYGRPPDEVHLIDWLKRLVSNRNPEGVLDPKLSEKPTSRALKRALLVALRCVDPNAQKRPKMGHIIHMLEAEEATLKGDRKTGKNPENSHADNVKDGLSERQAIELGETNVDEQRAT 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6874473 6877056 + CmaCh03G009710.1 Cma03g00971 290542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00971 502 CDD STKc_IRAK 189 455 - -
Cma03g00971 502 ProSitePatterns Protein kinases ATP-binding region signature. 189 211 IPR017441 GO:0005524
Cma03g00971 502 Gene3D Phosphorylase Kinase; domain 1 164 258 - -
Cma03g00971 502 SMART serkin_6 183 454 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g00971 502 Coils Coil 502 502 - -
Cma03g00971 502 Gene3D Transferase(Phosphotransferase) domain 1 259 470 - -
Cma03g00971 502 Pfam Protein kinase domain 186 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g00971 502 ProSiteProfiles Protein kinase domain profile. 183 461 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g00971 502 PANTHER RECEPTOR-LIKE KINASE PLANT 1 495 - -
Cma03g00971 502 SUPERFAMILY Protein kinase-like (PK-like) 164 455 IPR011009 -
Cma03g00971 502 ProSitePatterns Serine/Threonine protein kinases active-site signature. 305 317 IPR008271 GO:0004672|GO:0006468
Cma03g00971 502 PANTHER OS01G0323000 PROTEIN 1 495 - -
Cma03g00971 502 MobiDBLite consensus disorder prediction 462 502 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00971 Cma07g00696 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00971 Cma-Chr3:6874473 Cma06g01080 Cma-Chr6:7267301 0 dispersed
Cma18g01268 Cma-Chr18:9855086 Cma03g00971 Cma-Chr3:6874473 4.37E-57 dispersed
Cma12g00558 Cma-Chr12:2910366 Cma03g00971 Cma-Chr3:6874473 5.11E-64 wgd
Cma03g00971 Cma-Chr3:6874473 Cma05g00175 Cma-Chr5:740818 0 wgd
Cma03g00971 Cma-Chr3:6874473 Cma07g00696 Cma-Chr7:3064864 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68429 PF00069 Pkinase 1.30E-46 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00971 - - cmax:111497422 921.383