Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00990 ATGAAGGATAACTCCTCCAAACTTATTGTTTTCTTGCTTATAAGCTTCGTTTTCTTGAATCACCTCCTTGTGTCCTCACAACTTGATTATAGATTCTATGATGACTCGTGTCCCAACCTAACAAGGATTGTCAGATATGGCGTCTGGATGGCAGTTTCTAACGATACTAGGATGGCTGCTTCTCTCTTACGCCTTCATTTTCATGATTGCTTTGTCAACGGATGTGATGGATCATTGTTGCTTGATGACACTAGCTCATTTAAAGGGGAGAAAAATGCATTGCCAAATATGAACTCAGTTCGAGGCTATGAGGTCATTGATGATATAAAGGCTGTTTTAGAGAGAGTCTGCCCATCTGTCGTGTCATGCACTGATATAGTGACTCTAGCAGCTAGAGAGGCTGTCTACCTTGCTGGAGGACCCTTTTGGCCCATTCCACTCGGTCGGCGAGATGGCACGACAGCAAGCGAGAGTGAAGCCAATCGGCTGCCATCACCGTTGGAGCCATTGGAGAATATCATTGCAAAATTCACTTCAAAAGGGCTTGATGTAAAGGATGTTGTCGTGCTCTCAGGTGCACACACTTTCGGGTTAGCTCGGTGCATGATGTTCAAGCATAGGCTGTTCAACTTCGATGGCTCTGGCAATCCTGACCCAGAACTAGATGTCATGCTGCGACAGAATTTACAGAGCGTCTGTCCCAATCAAGATGATTCCAACGACAAACTGGCCCCCTTGGACACGTACACGATCAGCAGGTTTGACAATGTGTATTACAGAAACTTGGTGAACAAGTTGGGACTTTTGCAGTCAGACCAAGCTCTGATGAAACACAACACAACTGCTCCGTTGGTGGTGAGCTACAGCAGGTACCCATACCTGTTTAACAGGGACTTTGGAGCATCAATGGTGAAGCTGGCCAATACTGGAGTCCTTACAGGCCAAAATGGGGAAATTAGGAAGAATTGCAGGGTGGTGAACTAG 984 45.93 MKDNSSKLIVFLLISFVFLNHLLVSSQLDYRFYDDSCPNLTRIVRYGVWMAVSNDTRMAASLLRLHFHDCFVNGCDGSLLLDDTSSFKGEKNALPNMNSVRGYEVIDDIKAVLERVCPSVVSCTDIVTLAAREAVYLAGGPFWPIPLGRRDGTTASESEANRLPSPLEPLENIIAKFTSKGLDVKDVVVLSGAHTFGLARCMMFKHRLFNFDGSGNPDPELDVMLRQNLQSVCPNQDDSNDKLAPLDTYTISRFDNVYYRNLVNKLGLLQSDQALMKHNTTAPLVVSYSRYPYLFNRDFGASMVKLANTGVLTGQNGEIRKNCRVVN 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6983239 6985060 - CmaCh03G009900.1 Cma03g00990 290561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00990 327 ProSitePatterns Peroxidases active site signature. 59 70 IPR019794 GO:0004601
Cma03g00990 327 Gene3D - 31 327 - -
Cma03g00990 327 PANTHER PEROXIDASE 12 326 - -
Cma03g00990 327 CDD secretory_peroxidase 27 326 IPR033905 GO:0004601|GO:0042744
Cma03g00990 327 PRINTS Plant peroxidase signature 37 56 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma03g00990 327 PRINTS Plant peroxidase signature 61 81 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma03g00990 327 PRINTS Plant peroxidase signature 101 114 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma03g00990 327 PRINTS Plant peroxidase signature 120 130 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma03g00990 327 PRINTS Plant peroxidase signature 139 154 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma03g00990 327 PRINTS Plant peroxidase signature 185 197 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma03g00990 327 PRINTS Plant peroxidase signature 245 260 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma03g00990 327 PRINTS Plant peroxidase signature 261 278 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma03g00990 327 PRINTS Plant peroxidase signature 301 314 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma03g00990 327 Pfam Peroxidase 49 290 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma03g00990 327 Gene3D Peroxidase, domain 2 164 306 - -
Cma03g00990 327 SUPERFAMILY Heme-dependent peroxidases 27 327 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cma03g00990 327 ProSiteProfiles Plant heme peroxidase family profile. 27 327 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma03g00990 327 PANTHER PEROXIDASE 72-RELATED 12 326 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma03g00990 327 ProSitePatterns Peroxidases proximal heme-ligand signature. 186 196 IPR019793 -
Cma03g00990 327 PRINTS Haem peroxidase superfamily signature 59 73 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma03g00990 327 PRINTS Haem peroxidase superfamily signature 121 138 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma03g00990 327 PRINTS Haem peroxidase superfamily signature 139 151 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma03g00990 327 PRINTS Haem peroxidase superfamily signature 186 201 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma03g00990 327 PRINTS Haem peroxidase superfamily signature 247 262 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00457 Cma-Chr2:2382899 Cma03g00990 Cma-Chr3:6983239 8.71E-129 dispersed
Cma03g00990 Cma-Chr3:6983239 Cma01g00720 Cma-Chr1:3790072 1.48E-104 dispersed
Cma11g01837 Cma-Chr11:12261525 Cma03g00990 Cma-Chr3:6983239 4.66E-92 dispersed
Cma18g00288 Cma-Chr18:1529480 Cma03g00990 Cma-Chr3:6983239 1.03E-87 dispersed
Cma03g00990 Cma-Chr3:6983239 Cma20g00313 Cma-Chr20:1550512 2.57E-108 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00990 K00430 - csv:101218459 595.119