Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00991 ATGGGTTGGTTGCGCAACATCTCCTTTACTTCTTCCTCCATGGTGAGGATTCCGGCCACTGCCACCGGTGACGATTCCCCGACCAGAAAGGCTACTACCAGAGACTCCTACAATCATAATTATCGGGGAGTTGTTTGGCGTTTTGGCGCCTCTAAACATTCCCGCCATAGGAAGCTTCGGAACTTAAGCGGACGTGAGGGTGCCGCTGCTTCTTTGGCTAAATGGTCCGATACTACGCCCGAACCCGACTCCTTGTCGCGACTGTCGAGTACTTCTGATGAACATGCCGTGCCCTTGCCGCTCCCGGAGGTTCCCCCGGTATTTCAGCGTCGTGAAGGGATCTCGAATTCGAATTCTGCTTGTGGAGACGGGGATTGTCCTCTTCCGTCGCCCAAGGATTGGCATGGCCGAGGCGGGGACGACCGTGATGTTGATAGATGTAGAACTGCACCTTCTCTTAAGATTGGAGGCAGGGATTCCATTGGCACTCCGATTAAAAGTATATCTGATTCTGGGGAGAGGCAGAAGAAAGAAGATCAGATTGGGACAAGGTCGTCTGGGAGGGTGAATCAATATGCCAGACGCTTTCCTGAAGCATCTCAGAATAAATTTTGGATTGACGTTCCCTGTAGGAGTGCTCCTACTAGTCCTTTTGCAAGTCCTACACTCAGTCCCCAAAGAAATAGTGACAGGAACCTTTCAAACTCCCATCATGTGGCTCCATTAGAATATCAAGGCTGGTCTGCACCTGAGCTACCATCCTCAGCAATGATGCGGGGGGTTCCTCCTGCATTCTTTGATGGCTCCACTCTTAGCTCTGAGAGTTCTCCCATGCATAGCCCAACAGGTAGAAATCCCCACCAAGATCCCAGAAGTCCAACAGGAGCTTCATCTCCATTGCACACCAAGATTTCCCTTGAAACACATGCTCTGCGTCGTGAAGGTTCTGGTCCTGTCAGTGTCCACCCATTACCTCTTCCTCCTGGAGTACCAATGCCTTCGTCGTCAATCTCAATGACTTCACCGTCAATCCCAACGCCTTCACCATCAACCCCAACGCCTCTACCATCAACCCCAATTACAGAAGCTAACACTAAAGCTGAGCCAATCTCAATGAAAAATCAATGGCGGAAAGGAAAACTTATTGGCCGGGGCACATTTGGAAGTGTTTATGTTGCAAGCAACAGAGAAAATGGAGCTTTATGTGCAATGAAGGAAGTTGAATTATTTCACGATGATCCAAAGTCAGCTGAATGTATAAAGCAATTAGAACAGGAAATCAAACTTCTGAGCCAGCTAAAGCATCCAAATATTGTCCAGTACTATGGTAGTGATATTGTTGAAGATCGATTATATATTTACCTGGAGTATGTTCATCCTGGTTCAATTAATAAATATGTTCGTGAACACTGTGGAGCCATGACAGAATCTGTTGTTCGAAGTTTTACTCGTCACATCCTATCAGGATTGGCCTACTTGCACAGTACAAAGACGATACATCGGGACATTAAAGGTGCTAATTTGCTTGTAGACTCTTGTGGGGTTGTCAAGCTTGCTGACTTTGGAATGGCTAAACATCTTACAGGACAAGTTGCTGATCTCTCTTTAAAGGGAAGTCCATACTGGATGGCTCCTGAGCTCCTTCTTTCTGTGATGCAGAAGGATAACAACTCTGATCTTGCCTTAGCTATTGATATTTGGAGCCTTGGTTGCACTATTATAGAAATGTTCACTGGCAAGCCACCTTGGAGCGACTATGAAGGGGCTGCAGCTATGTTTAAGGTAATGAGAGATACCCCAACAATACCTGAATCATTATCATATGAAGCCAGAGATTTCTTAAAATGCTGCTTTCAGAGAAATCCTGCAGAGAGGTCGACTGCTGCCATGCTGCTTGAACATCCATTTATAAAAAACTTGCAACATCCAGATGCTCCACCTTGCTATCAGGCCATTGCTAGATCGAGTTTGATGGTAAACTTAACATACCCAAGTAAACAATATTCAAGTAAACTTGATCAGTCTTCCATGCTTCCAAGCTCACAAAATTCCAAGGGAATTGTGATTGGCTCACTCTCTCATCATGAAACCTCTGACTTAACTGTAATGTCTCGTCATTCTCCCCGTTCTACCCTTGAGGCTCTTCCAGTACTGTCACCTCCATGCTTAGTTCACAATGTGCACCATCTCAGTTCCCCTGCAAATGCACTCGGCGTTAGCCTCAGTTATGGCAATATCCACCTGTCATTCCTTGGTGTTGGCGTGGGAAAATCACCACTTCCATGTACCACTTCCATATTAGAGAGAAAAAAGAAAGAAAGAAAGAAAGAAACAGAGAGAAAGATGGAAGCTCCAGCTCCACAAGCAATAGAGGTTTCCAGCAAGAACCTTGGGGTGGAAGAAGATGAGCAAGATAAAGCCCTCAATGAGTGCTGTTCTTGCTGCTATGACTGCTCCCAAAGCTGGCTTGATTTCTTGTGCTGTTCGGATGTGTGTGGGTGTTAG 2505 46.11 MGWLRNISFTSSSMVRIPATATGDDSPTRKATTRDSYNHNYRGVVWRFGASKHSRHRKLRNLSGREGAAASLAKWSDTTPEPDSLSRLSSTSDEHAVPLPLPEVPPVFQRREGISNSNSACGDGDCPLPSPKDWHGRGGDDRDVDRCRTAPSLKIGGRDSIGTPIKSISDSGERQKKEDQIGTRSSGRVNQYARRFPEASQNKFWIDVPCRSAPTSPFASPTLSPQRNSDRNLSNSHHVAPLEYQGWSAPELPSSAMMRGVPPAFFDGSTLSSESSPMHSPTGRNPHQDPRSPTGASSPLHTKISLETHALRREGSGPVSVHPLPLPPGVPMPSSSISMTSPSIPTPSPSTPTPLPSTPITEANTKAEPISMKNQWRKGKLIGRGTFGSVYVASNRENGALCAMKEVELFHDDPKSAECIKQLEQEIKLLSQLKHPNIVQYYGSDIVEDRLYIYLEYVHPGSINKYVREHCGAMTESVVRSFTRHILSGLAYLHSTKTIHRDIKGANLLVDSCGVVKLADFGMAKHLTGQVADLSLKGSPYWMAPELLLSVMQKDNNSDLALAIDIWSLGCTIIEMFTGKPPWSDYEGAAAMFKVMRDTPTIPESLSYEARDFLKCCFQRNPAERSTAAMLLEHPFIKNLQHPDAPPCYQAIARSSLMVNLTYPSKQYSSKLDQSSMLPSSQNSKGIVIGSLSHHETSDLTVMSRHSPRSTLEALPVLSPPCLVHNVHHLSSPANALGVSLSYGNIHLSFLGVGVGKSPLPCTTSILERKKKERKKETERKMEAPAPQAIEVSSKNLGVEEDEQDKALNECCSCCYDCSQSWLDFLCCSDVCGC 834
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6986502 6993475 - CmaCh03G009910.1 Cma03g00991 290562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00991 834 Pfam Protein kinase domain 377 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g00991 834 MobiDBLite consensus disorder prediction 134 149 - -
Cma03g00991 834 MobiDBLite consensus disorder prediction 259 300 - -
Cma03g00991 834 SMART serkin_6 376 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g00991 834 Gene3D Transferase(Phosphotransferase) domain 1 372 662 - -
Cma03g00991 834 SUPERFAMILY Protein kinase-like (PK-like) 358 682 IPR011009 -
Cma03g00991 834 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 5 1 720 - -
Cma03g00991 834 MobiDBLite consensus disorder prediction 71 189 - -
Cma03g00991 834 ProSiteProfiles Protein kinase domain profile. 376 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g00991 834 MobiDBLite consensus disorder prediction 268 300 - -
Cma03g00991 834 MobiDBLite consensus disorder prediction 313 357 - -
Cma03g00991 834 ProSitePatterns Protein kinases ATP-binding region signature. 382 405 IPR017441 GO:0005524
Cma03g00991 834 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 720 - -
Cma03g00991 834 MobiDBLite consensus disorder prediction 77 93 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00991 Cma-Chr3:6986502 Cma16g00114 Cma-Chr16:522963 5.63E-114 dispersed
Cma12g00514 Cma-Chr12:2651023 Cma03g00991 Cma-Chr3:6986502 3.28E-156 wgd
Cma03g00991 Cma-Chr3:6986502 Cma05g00206 Cma-Chr5:874311 3.12E-156 wgd
Cma03g00991 Cma-Chr3:6986502 Cma07g00720 Cma-Chr7:3172737 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68430 PF00069 Pkinase 4.40E-67 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00991 - - cmax:111478157 1306.97