Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01027 ATGGGAATCGCTAAGGCTCCATTGATTTTCTCCACTAATTCTTCTATGTCCCACCATTTTCATCAACATCAAGTGAAGATTAATCTCCTCCCCCAACAGATCCGCCCTCTCCACTCCTTCTCCGACTCAATTCCGCCGTCTACCGTCGCCGGAACAGACCCACAACTTCATCATGTTTATGCACCTGCACCTACTCCTGGGACCATGTTATCAGAAATCTTCAACTTCCCTCCACCTTCTTCCTCTGCCGCCGTTGAATTCTCTGACAATCTCCCAACTTTACGCCCGCCCAACTCCGCTGCGCTCATGCCGCTTTTTCTCATGAACCCTCCTCCGCCACTGCGATCCCCATCGTCACCCTCTACCTCCTCCACTCTCCACATGCTCCTACCCAACCCACATGGGGGTTTTGAAGGCGGAGTTGGCGTTGGAGATCAAGTGGAGTTTGGTCAATTTGTCGTCGAAAGTCGAGGTCTTTCGCTCTCTCTTCATTCGTCGGACGGTGGGGTGAAAGGTGATGAATTGGGAGTTAGGGATGGTGGGGTTTTGTCTAGTTATAACAACAACAATCAAGTCCGGGATGGAGGAAGTGGATCAACGTCCTCAATTTTGCAATATTCTTTGAAAAATAATTCAGACAATTCTCCTCTAGCTTCACAAATTATGAATCCCAACCATCAAGTTCAAATTGGATTTGGGTCATCTTTGGGAGTTGTAAATGTGTTGAGGAATTCAAGATATGTCAAACCCACACAGGAATTACTCGAGGAATTTTGTAGTGTTGGGAAGGTTCAATTCAAGAAGAAAAAGTTCAATACTGAAACCACCACCACCGCCGCCGGTGGCTCGTCATCGTCGTCAAAAGATCAACCACCCTTATCGGCTGCTGACAGAATTGAACATCAACGGAGAAAGGTCAAACTATTGTCCATGCTTGATGAGGTTGAACGGAGATACAACCTGTATAGGGAGCAAATGCAAATGGTAGTGAACTCGTTTGACCTGGTGATGGGGTTCGGGGCGGCAGCGCCCTACACGACATTGACTCAGAAGGCGATGTCGAGGCACTTCCGGTGTCTGAAGGATGCGTTAGCGGAGCAGTTAAAGCAGAGCTACGAGGCTTTGGGGGAGAAAGGCGGCAATGGAGGCTACGGCGTAACAAAAGGAGAGACCCCAAGATTAAAGCTTCTGGAACAGAGCCTCCGCCAGCAAAGGGCTTTCCATCAAATGGGTATGATGGAACAAGAAGCTTGGAGACCACAGCGTGGCCTCCCTGAACGATCTGTCAACATTCTCAGAGCTTGGCTCTTCGAGCATTTTCTTCACCCGTACCCCAGCGACGCAGACAAGCTGCTGTTAGCTCGACAGACTGGTTTGTCCAGAAATCAGGTCTCGAATTGGTTCATTAATGCAAGAGTTCGGTTGTGGAAACCAATGGTGGAAGAAATGTATCAACTTGAAGACAAAGTCGAAACAGACCATCAGAGTGATCATCATCAAGGATCAGAAGACAATAACAATCAAACAAAAAACAGTGACATGAATGCACAAAATCCAACACCCACCACTTCCTCTGCTGCTCCACCGCCATCAGCCACCACTGCCGCCGCCCAGCAACTAACAGCTGCTTTCACGGCGACGCATGAGTACTCAGAGCTTCATGATGTATGGCGACATGGAAGTGGAGATCATCAACATTATGAGACTGTTACAGGGACTGACAACATGAATAATCATGGACCAACACTTATAAGGTTTGGCCCTACTGCTACGACCACCGGTGACGTGTCTCTCACTTTAGGGCTCCGCCACACTGGAAACACCTCCTCCTCCTCCTCCTCCGCCGCCGCAGGTAACCCTTCTTTCTTCCTTAGAGACTTTGGTCACTCTTAG 1893 48.81 MGIAKAPLIFSTNSSMSHHFHQHQVKINLLPQQIRPLHSFSDSIPPSTVAGTDPQLHHVYAPAPTPGTMLSEIFNFPPPSSSAAVEFSDNLPTLRPPNSAALMPLFLMNPPPPLRSPSSPSTSSTLHMLLPNPHGGFEGGVGVGDQVEFGQFVVESRGLSLSLHSSDGGVKGDELGVRDGGVLSSYNNNNQVRDGGSGSTSSILQYSLKNNSDNSPLASQIMNPNHQVQIGFGSSLGVVNVLRNSRYVKPTQELLEEFCSVGKVQFKKKKFNTETTTTAAGGSSSSSKDQPPLSAADRIEHQRRKVKLLSMLDEVERRYNLYREQMQMVVNSFDLVMGFGAAAPYTTLTQKAMSRHFRCLKDALAEQLKQSYEALGEKGGNGGYGVTKGETPRLKLLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKLLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQLEDKVETDHQSDHHQGSEDNNNQTKNSDMNAQNPTPTTSSAAPPPSATTAAAQQLTAAFTATHEYSELHDVWRHGSGDHQHYETVTGTDNMNNHGPTLIRFGPTATTTGDVSLTLGLRHTGNTSSSSSSAAAGNPSFFLRDFGHS 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7153378 7157119 - CmaCh03G010270.1 Cma03g01027 290598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01027 630 MobiDBLite consensus disorder prediction 275 292 - -
Cma03g01027 630 SMART prehox3 236 366 IPR006563 -
Cma03g01027 630 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 57 610 - -
Cma03g01027 630 MobiDBLite consensus disorder prediction 490 504 - -
Cma03g01027 630 Coils Coil 305 332 - -
Cma03g01027 630 SUPERFAMILY Homeodomain-like 419 486 IPR009057 -
Cma03g01027 630 Gene3D - 421 483 - -
Cma03g01027 630 CDD homeodomain 418 479 IPR001356 GO:0003677
Cma03g01027 630 MobiDBLite consensus disorder prediction 275 299 - -
Cma03g01027 630 SMART HOX_1 418 482 IPR001356 GO:0003677
Cma03g01027 630 Pfam Associated with HOX 241 364 IPR006563 -
Cma03g01027 630 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 2 57 610 - -
Cma03g01027 630 Pfam Homeobox KN domain 435 474 IPR008422 GO:0003677|GO:0006355
Cma03g01027 630 MobiDBLite consensus disorder prediction 490 537 - -
Cma03g01027 630 MobiDBLite consensus disorder prediction 505 537 - -
Cma03g01027 630 ProSiteProfiles 'Homeobox' domain profile. 415 478 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01027 Cma-Chr3:7153378 Cma15g01244 Cma-Chr15:7909711 6.51E-91 dispersed
Cma02g00561 Cma-Chr2:3177948 Cma03g01027 Cma-Chr3:7153378 2.41E-166 wgd
Cma20g01145 Cma-Chr20:9080279 Cma03g01027 Cma-Chr3:7153378 3.37E-160 wgd
Cma03g01027 Cma-Chr3:7153378 Cma07g00746 Cma-Chr7:3306916 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34679 PF07526 POX 3.00E-47 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01027 - - bhj:120073177 757.288