Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01031 ATGGCGAAATCGGAGCACAATTGGAGAAGGGGGAACGGCCCGTTGCTCCTGATTTCACAGATTCCTTCCTCCACTAATATCACCGATTTTCTTCCTCCTCGTTTTAGGAATCTGCTTTCCACCATTTCTGATTTCGTTCCTCTGAAGCTGCTGATATTTGGGGGGGAAATTAAGATGGCGAATGAGTTTGGGGAATCAACAAGTGTGCCACATCAAAACCCTTCTTGGTCCAGTAATAGTGACAACACTAACAATGATACTGGCGATTTTGAATGCAATATCTGCTTCGAGTTAGCTCAAGACCCAATTATCACTCTTTGCGGCCATCTCTTTTGCTGGCCCTGTCTGTATAGATGGCTGCATCATCACTCGCAATGTCAAGAATGTCCTGTTTGTAAGGCTCTTGTTCAGGAGGAGAAGTTGGTTCCTCTTTATGGTAGGGGTAAAGCACCATCTGACCCAAGATTAAATAGATATCCTGGTATTGATATTCCAAATCGCCCTGCCGGGCAAAGGCCTCAAACAGCACCACCCCCTGCAGCTAATGACTTTGCAAACTACGGGTTTGGATTCACTGGTGGCTTTATGCCAATGGCGGCAGCAAGGATTGGGAACTTCACTTTAGCTACTGCTTTTGGTGGTCTGATCCCATCTTTATTCAACATCCAGTTTCATGGATTTCCTGATGCTACAGTGTATGGAACCACCTCTGGTTACCCCTATGCATTCAACACATTCCATGGGGGTCATGGTCACCATTTTCCACAGCCACCGAGTCGAGGTCAGCATGCTGATAACGTACTGAAAAATCTCTTTTTACTCGTCGGCGTCTTTGTAATTCTTGCCTTGCTTTGGTGGTGA 861 45.99 MAKSEHNWRRGNGPLLLISQIPSSTNITDFLPPRFRNLLSTISDFVPLKLLIFGGEIKMANEFGESTSVPHQNPSWSSNSDNTNNDTGDFECNICFELAQDPIITLCGHLFCWPCLYRWLHHHSQCQECPVCKALVQEEKLVPLYGRGKAPSDPRLNRYPGIDIPNRPAGQRPQTAPPPAANDFANYGFGFTGGFMPMAAARIGNFTLATAFGGLIPSLFNIQFHGFPDATVYGTTSGYPYAFNTFHGGHGHHFPQPPSRGQHADNVLKNLFLLVGVFVILALLWW 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7174462 7176989 - CmaCh03G010310.1 Cma03g01031 290602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01031 286 Pfam Zinc finger, C3HC4 type (RING finger) 91 132 - -
Cma03g01031 286 ProSitePatterns Zinc finger RING-type signature. 107 116 IPR017907 -
Cma03g01031 286 MobiDBLite consensus disorder prediction 156 177 - -
Cma03g01031 286 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 146 IPR013083 -
Cma03g01031 286 CDD RING-HC_AtRMA_like 90 134 - -
Cma03g01031 286 PANTHER RING ZINC FINGER PROTEIN-RELATED 60 285 - -
Cma03g01031 286 ProSiteProfiles Zinc finger RING-type profile. 92 133 IPR001841 -
Cma03g01031 286 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 60 285 IPR045103 GO:0005783|GO:0006511|GO:0061630
Cma03g01031 286 SUPERFAMILY RING/U-box 88 145 - -
Cma03g01031 286 SMART ring_2 92 132 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01031 Cma-Chr3:7174462 Cma12g00497 Cma-Chr12:2578149 1.37E-66 dispersed
Cma03g01031 Cma-Chr3:7174462 Cma05g00220 Cma-Chr5:929144 6.40E-78 wgd
Cma03g01031 Cma-Chr3:7174462 Cma07g00752 Cma-Chr7:3339684 8.99E-135 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01031 K10666 - csv:101205026 446.047