Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01052 ATGGGATCATCGGCGTCGGAAGAAGACATAATAATGGCGACTCTACTGCAAGCCGAACAAGCCGCCGCTATCACCACCAATTTTGCTTCCTTCCCTGAAAACATCAATAATCTCGTTCAACAAACCCTAAAACCCTTCCTCTTCTTCAAAGCCGACGACCAATATTCGTTACAGCAACAACAACAACAGCAATCCGTTTTCCCGTTCCCGTTTCCGTTCCCCTCAACCACCGCCACCGCCACTTCCCATCTCCTTTCCTCTCTCCTCAGATCCTCGCCTTCCTCGCTCAGGGATGCAGGAGAGAGCGGAAATCATGGCGACGGCGACGGCGACGGCGACAACCGCAAAGGTGGATTGAGGGTTAGGACGGTGAAGATGAAGAGGATGAAAGGGAGGAGGAAAGTGAGAGAGCCGAGATTCTGCTTCAAAACCATGACGGATGTGGACGTTCTTGACGACGGTTACAAATGGAGAAAGTACGGCCAAAAAGTTGTTAAGAACACCCTCCATCCAAGGAGTTACTATCGTTGCACGGAAGAGAATTGTAAGGTAAAGAAACGAGTAGAAAGATTAGCAGAAGATCCGAGAATGGTGATAACGACCTACGAAGGAAGACACGCTCATTCCCCATCCGATCGTAATTTAGAAGACACCAACATGGGTTGCCTCAACACTTTCTTTTGTTAG 687 48.91 MGSSASEEDIIMATLLQAEQAAAITTNFASFPENINNLVQQTLKPFLFFKADDQYSLQQQQQQQSVFPFPFPFPSTTATATSHLLSSLLRSSPSSLRDAGESGNHGDGDGDGDNRKGGLRVRTVKMKRMKGRRKVREPRFCFKTMTDVDVLDDGYKWRKYGQKVVKNTLHPRSYYRCTEENCKVKKRVERLAEDPRMVITTYEGRHAHSPSDRNLEDTNMGCLNTFFC 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7258119 7259224 + CmaCh03G010520.1 Cma03g01052 290623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01052 228 Gene3D WRKY domain 138 204 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma03g01052 228 ProSiteProfiles WRKY domain profile. 146 211 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma03g01052 228 PANTHER WRKY TRANSCRIPTION FACTOR 13-RELATED 51 214 - -
Cma03g01052 228 SMART WRKY_cls 151 210 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma03g01052 228 MobiDBLite consensus disorder prediction 92 122 - -
Cma03g01052 228 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 51 214 IPR044810 GO:0003700
Cma03g01052 228 MobiDBLite consensus disorder prediction 102 120 - -
Cma03g01052 228 Pfam WRKY DNA -binding domain 152 208 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma03g01052 228 SUPERFAMILY WRKY DNA-binding domain 143 210 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00592 Cma03g01052 CCT
Cma03g01052 Cma20g01105 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01052 Cma-Chr3:7258119 Cma17g00379 Cma-Chr17:2109793 3.06E-36 dispersed
Cma14g02165 Cma-Chr14:14852671 Cma03g01052 Cma-Chr3:7258119 6.50E-49 transposed
Cma02g00592 Cma-Chr2:3501164 Cma03g01052 Cma-Chr3:7258119 8.51E-60 wgd
Cma20g01105 Cma-Chr20:8639205 Cma03g01052 Cma-Chr3:7258119 1.69E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34682 PF03106 WRKY 4.50E-25 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01052 - - cpep:111804309 340.117