Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01053 ATGATACCCTTTTTTCTCAGGCTCTGTTTCTTCCTTCTTCTTCTTATTTCCTTCTCTGCAACTTCTTCTTCCTCTTCTCATGGAGACACCCAGAAGCTTATTTCCTTCAAATCTTCACTTCCAAGCTCATCCCTGCTTCAAAACTGGCTCTCCAATGCCGACCCATGTTCCTTTTCTGGTATTACTTGTAAGGAAACCAGAGTTTCCGCTATAGACTTGAGCTTCTTGTCTTTGAGCTCTAATTTCAGCCATGTTTTCTCCTTGCTTGCGGCGCTCGACCATTTGGAATCGCTTTCTCTCAAATCCACTAACCTTACTGGCTCCATTTCTTTGCCCTCTGGATTCAAGTGTAGCCCTCTGCTTTCCTCTGTAGATCTGTCCCTCAATGGCTTATTTGGGTCTGTTTTTGATGTTTCCAACTTGGGATTTTGCCCCAATCTCAAGTCGCTTAATCTGTCCTTTAACTATTTTGATTTTCCACTTAAAGACTCTGTCCCACGATTCAACCTCGATTTGCAGGTCCTCGATCTTTCTTCCAACCGGATTGTTGGGTCGAAATTAGTTCCATGGATTTTCTCTGGTGGGTGTGGTAATTTGCAGCTCTTGGCATTGAAGGCCAACAAACTTAGCGGCGAGATTAATCTCTCGTCCTGTAATAAACTCGAGCATTTGGATATCTCCGGCAACAATTTCTCTGTGCGTATTCCGTCCTTAGGCGATTGCTCTGTTTTGGAGCATTTGGATATCTCCGGCAACAAGTTCACCGGCGACGTCGGACATGCTCTGTCGTCTTGTCTGCAACTCAGATTTCTGAATCTCTCCAGCAACCAGTTCGTGGGTCCAATCCCTTCGTTTGCATCTCCCAATTTGTGGTTCCTTTCGCTTGCTAACAACCATTTCCAGGGGGAGATTCCTGTAAGTATTGCAGATTTATGTTCTAGTTTGGTGCAGCTCGATCTTTCTTCTAATAGTTTGATTGAGTCTTTACCTTCTGCTATGGGGTCTTGTTCTTCGTTGGAAACATTGGACATTTCGAAAAATAACCTCTCTGGTGAGCTCCCCATCGCCGTTTTTGCCAAAATGAGTAGTCTCAAGAAACTCTCTGTCTCCGACAATAAGTTCTTTGGGGTTTTGTCGGATTCTCTTTCTCATCTCTTCACTTTGAATTCTTTGGATCTGAGTTCTAATAACTTTTCTGGGTCGATTCCGGCGGGGCTCTGTGAAGACCCTAATAACAGCTTGAAAGAATTGTTCCTCCAGAACAATTGGTTTACAGGTGGAATCCCTGCAAGTATTAGCAATTGTTCTCAGCTGGTTTCTCTTGATTTGAGCTTCAACTTTCTGAGTGGGACGATCCCTTCCAGCTTGGGATCACTTTCTAAGCTCAAGAACTTGATCATGTGGTTGAATCAGCTGGAGGGGGAGATCCCATCTGATTTCAGCAACTTTCAGGGGCTTGAGAATCTGATCCTGGATTTCAATGAGCTCACCGGCACAATCCCTTCAGGATTAAGCAACTGCACCAACTTGAACTGGATTTCGTTGTCAAATAACCGGTTGAGCGGAGAGATTCCAGCCTGGATTGGGCGCCTCCCAAGCCTCGCCATCCTTAAACTCAGCAACAACTCGTTCTATGGTCGGATTCCTCCGGAGCTGGGCGATTGTCGGAGCTTGATCTGGCTTGACCTGAATACCAATTTGTTGAATGGAACAATCCCTCCCGAGTTGTTTCGTCAATCAGGTAACATTGCTGTTAACTTCATTACAGGGAAGTCTTATGCTTACATTAAGAACGATGGTAGCAAGCAGTGCCATGGCGCTGGAAATTTGCTTGAGTTTGCTGGAATTAGACAAGAACAAGTGAACAGGATTTCAAGCAAGAGTCCCTGCAATTTCACCAGAGTTTATAAAGGAATGACTCAGCCAACCTTTAACCATAATGGCTCCATGATTTTTCTTGATCTTTCCCATAATATGTTGTCTGGTAGTATCCCTAAGGAGATTGGTTCTACAAATTATCTATACATTTTGGATTTGGGACATAACAGTCTCTCGGGACCGATCCCGCAGGAGGTCGGTGGCTTGACGAAACTCAACATTCTTGATCTATCAAGCAATGAGCTTGAAGGATCAATTCCATTGTCTTTGACAGGACTTTCCTCCCTCATGGAGATTGATCTGTCCAACAATCATCTCAACGGTTCGATACCCGAATCAGCTCAGTTCGAAACATTCCCAGCGTCGGGATTTTCGAATAATTCTGGCCTATGTGGGTATCCTCTCCCTCCATGTGGGGTTGATTCAGGAGCAAGAGCAAATTCTCAGCATCAAAGATCTCATAGGAAACAGGCATCCCTTGCAGGGAGTGTTGCAATGGGGCTACTCTTCTCGCTTTTCTGTATTTTCGGTCTGATTATTGTCGTTGTCGAGACGAGGAAGCGAAGGAAAAAGAAGGATTCTACTCTTGATACTTATGTCGAGAGTCATTCACCTTCAGGCACGACGACCACTGTTAACTGGAAGTTAACCGGTGCTCGTGAAGCATCGAGTATTAGTCTTGCAACGTTTGAGAAGCCACTTCGGAAGCTTACATTTGCCGATCTCCTCAAGGCTACGAATGGCTTCCACAACGATAGCCTGATTGGTTCGGGGGGTTTCGGCGACGTATATAAGGCTCGATTGAAGGATGGAAGCACTGTCGCGATCAAGAAGCTGATTCATGTCAGTGGACAGGGTGATCGTGAGTTCACTGCAGAAATGGAAACCATTGGCAAAATCAAACACCGAAACTTGGTACCGCTTCTGGGCTACTGCAAGGTCGGAGAAGAACGGTTGCTCGTGTACGAGTACATGAAATACGGAAGCTTAGAAGACGTTTTACACGACAAGAAGAAGGGTGGAATCAAACTGAATTGGGCAGCAAGAAGGAAGATTGCCATTGGAGCTGCAAGGGGACTGGCTTTCCTTCACCACAATTGCCTACCTCACATCATTCACAGGGACATGAAATCAAGCAATGTGTTGCTGGACGAGAACTTGGAAGCCAGAGTCTCAGATTTTGGAATGGCTAGACTAATGAGTGCCATGGACACCCATTTGAGTGTCAGCACATTAGCCGGAACACCCGGTTACGTCCCTCCCGAATATTACCAGAGCTTCCGGTGTTCTACAAAAGGCGACGTTTACAGTTACGGTGTTGTTATGCTCGAGCTCTTAACAGGAAAGCGACCCACAGACTCTGCTGATTTCGGTGACAACAATCTCGTCGGATGGGTAAAACAACACGCCAAGTTGGACCTAACCGATGTGTTCGATCGCGAACTCATAAAGGAAGATCCAAGCTTGAAGATAGAGCTTTTAGAACACTTGAAGGTAGCTGTTGCGTGCTTAGACGATAGGTCGTGGCGGCGTCCAACAATGATCCAAGTGATGACAATGTTCAAGGAAATCCAAGCAGGGTCGGGGATGATGGATTCCCAATCCACAATCGGAACCGAGAACGGAGGCTTCAGCGTCGACATTGTAGACATGAGCTTAAAGGAAGTACCAGAACCAGAAGGCAAGTAA 3567 45.7 MIPFFLRLCFFLLLLISFSATSSSSSHGDTQKLISFKSSLPSSSLLQNWLSNADPCSFSGITCKETRVSAIDLSFLSLSSNFSHVFSLLAALDHLESLSLKSTNLTGSISLPSGFKCSPLLSSVDLSLNGLFGSVFDVSNLGFCPNLKSLNLSFNYFDFPLKDSVPRFNLDLQVLDLSSNRIVGSKLVPWIFSGGCGNLQLLALKANKLSGEINLSSCNKLEHLDISGNNFSVRIPSLGDCSVLEHLDISGNKFTGDVGHALSSCLQLRFLNLSSNQFVGPIPSFASPNLWFLSLANNHFQGEIPVSIADLCSSLVQLDLSSNSLIESLPSAMGSCSSLETLDISKNNLSGELPIAVFAKMSSLKKLSVSDNKFFGVLSDSLSHLFTLNSLDLSSNNFSGSIPAGLCEDPNNSLKELFLQNNWFTGGIPASISNCSQLVSLDLSFNFLSGTIPSSLGSLSKLKNLIMWLNQLEGEIPSDFSNFQGLENLILDFNELTGTIPSGLSNCTNLNWISLSNNRLSGEIPAWIGRLPSLAILKLSNNSFYGRIPPELGDCRSLIWLDLNTNLLNGTIPPELFRQSGNIAVNFITGKSYAYIKNDGSKQCHGAGNLLEFAGIRQEQVNRISSKSPCNFTRVYKGMTQPTFNHNGSMIFLDLSHNMLSGSIPKEIGSTNYLYILDLGHNSLSGPIPQEVGGLTKLNILDLSSNELEGSIPLSLTGLSSLMEIDLSNNHLNGSIPESAQFETFPASGFSNNSGLCGYPLPPCGVDSGARANSQHQRSHRKQASLAGSVAMGLLFSLFCIFGLIIVVVETRKRRKKKDSTLDTYVESHSPSGTTTTVNWKLTGAREASSISLATFEKPLRKLTFADLLKATNGFHNDSLIGSGGFGDVYKARLKDGSTVAIKKLIHVSGQGDREFTAEMETIGKIKHRNLVPLLGYCKVGEERLLVYEYMKYGSLEDVLHDKKKGGIKLNWAARRKIAIGAARGLAFLHHNCLPHIIHRDMKSSNVLLDENLEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVMLELLTGKRPTDSADFGDNNLVGWVKQHAKLDLTDVFDRELIKEDPSLKIELLEHLKVAVACLDDRSWRRPTMIQVMTMFKEIQAGSGMMDSQSTIGTENGGFSVDIVDMSLKEVPEPEGK 1188
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7263570 7267136 - CmaCh03G010530.1 Cma03g01053 290624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01053 1188 Pfam Leucine rich repeat 674 732 IPR001611 GO:0005515
Cma03g01053 1188 Pfam Leucine rich repeat 485 543 IPR001611 GO:0005515
Cma03g01053 1188 SUPERFAMILY Protein kinase-like (PK-like) 861 1151 IPR011009 -
Cma03g01053 1188 Gene3D Phosphorylase Kinase; domain 1 835 950 - -
Cma03g01053 1188 SMART LRR_typ_2 337 360 IPR003591 -
Cma03g01053 1188 SMART LRR_typ_2 483 507 IPR003591 -
Cma03g01053 1188 SMART LRR_typ_2 556 579 IPR003591 -
Cma03g01053 1188 SMART LRR_typ_2 531 555 IPR003591 -
Cma03g01053 1188 SMART LRR_typ_2 361 384 IPR003591 -
Cma03g01053 1188 SMART LRR_typ_2 312 336 IPR003591 -
Cma03g01053 1188 SMART LRR_typ_2 695 718 IPR003591 -
Cma03g01053 1188 SMART LRR_typ_2 385 409 IPR003591 -
Cma03g01053 1188 SMART LRR_typ_2 172 194 IPR003591 -
Cma03g01053 1188 SMART LRR_typ_2 719 742 IPR003591 -
Cma03g01053 1188 SUPERFAMILY L domain-like 641 765 - -
Cma03g01053 1188 Gene3D Ribonuclease Inhibitor 33 764 IPR032675 -
Cma03g01053 1188 Pfam Leucine Rich Repeat 220 236 IPR001611 GO:0005515
Cma03g01053 1188 Pfam Leucine Rich Repeat 438 459 IPR001611 GO:0005515
Cma03g01053 1188 ProSitePatterns Serine/Threonine protein kinases active-site signature. 997 1009 IPR008271 GO:0004672|GO:0006468
Cma03g01053 1188 Pfam Leucine rich repeat N-terminal domain 28 63 IPR013210 -
Cma03g01053 1188 Gene3D Transferase(Phosphotransferase) domain 1 951 1152 - -
Cma03g01053 1188 Pfam Brassinosteroid receptor island domain 581 645 IPR045381 -
Cma03g01053 1188 Gene3D - 586 646 - -
Cma03g01053 1188 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 4 1160 - -
Cma03g01053 1188 SUPERFAMILY L domain-like 32 286 - -
Cma03g01053 1188 ProSitePatterns Protein kinases ATP-binding region signature. 881 904 IPR017441 GO:0005524
Cma03g01053 1188 SMART serkin_6 875 1147 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g01053 1188 SUPERFAMILY RNI-like 260 575 - -
Cma03g01053 1188 ProSiteProfiles Protein kinase domain profile. 875 1140 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g01053 1188 CDD STKc_IRAK 881 1150 - -
Cma03g01053 1188 Pfam Protein kinase domain 875 1144 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g01053 1188 Pfam Leucine Rich repeat 335 352 IPR001611 GO:0005515
Cma03g01053 1188 PANTHER SYSTEMIN RECEPTOR SR160 4 1160 - -
Cma03g01053 1188 PRINTS Leucine-rich repeat signature 339 352 - -
Cma03g01053 1188 PRINTS Leucine-rich repeat signature 695 708 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g01053 Cma07g00767 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01053 Cma-Chr3:7263570 Cma04g02153 Cma-Chr4:15068257 0 dispersed
Cma10g00211 Cma-Chr10:950082 Cma03g01053 Cma-Chr3:7263570 1.14E-148 dispersed
Cma17g01324 Cma-Chr17:8922872 Cma03g01053 Cma-Chr3:7263570 5.14E-06 dispersed
Cma03g01053 Cma-Chr3:7263570 Cma07g00767 Cma-Chr7:3443007 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68433 PF00069 Pkinase 1.80E-45 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01053 K13415 - csv:101209118 2105.1