Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01067 ATGGATACCGCTGGGAGACTCATTGCTGGGTCTCATAATCGAAACGAGTTTGTTCTGATCAATGCAGACGAGACTGCTCGGATCAAGGCTGTGAAGGAATTGAGTGGACAGACATGTCAGATTTGTGGAGACGAGGTTGAGTTAACTGTTGAGGGAGAGCTCTTTGTTGCCTGTAATGAATGTGCTTTCCCAGTTTGTAGACCTTGCTATGAGTATGAGAGAAGAGAGGGAAACCAAGCTTGTCCACAGTGTAAAACCAGATACAAACGCATTAAAGGTAGTCCAAGGGTTGAGGGTGATGAGGATGAAGATGGTATCGATGATTTGGACAACGAGTTTGACTATGCAAACCTCGATTCTTTGGGTCCTTATCATTCTGGAGAGGGAACGTATGGCTCGTACCATAACATGGGCTGTGGACAGTCGGAGCTCGAACCTTCTCCCCTTGGTTCTGAGATTCCTCTCCTGACATATGGCGAGGTGGATTATGAGATTTCTTCTGATCAACATGCTCTCGTGCCCCATTTTATGGGTCAGGGGAATCGAGTCCATCCAATGCCTTTCCATGATCCATCAATTCCTTCTCAACCTAGACCGATGGTTCCTCAAAAAGATATTGCGGTGTATGGTTATGGGAGCGTGGCATGGAAGGACCGAATGGAAGATTGGAAGAAGAAGCAAAATGATAAACTTCAAGTGGTGAAACACCAAGGGGTCGATGATGGTGGAAACGATATCGATGATCCCGATTTGCCCATGATGGATGAAGCTAGGCAACCACTATCAAGGAAATTACCCATCTCTTCGAGCAGGATAAATCCGTACAGATTAATCATCTTGCTTCGTCTTGTTATTCTTGGCCTGTTTTTCCAGTACAGAATTCTTCATCCAGTTAAAGATGCCTATGGCCTGTGGTTAACTTCAGTAATATGTGAAATATGGTTCGCCGTTTCGTGGATTCTGGATCAGTTCCCAAAATGGTGTCCAATAGAACGGGAAACTTATCTCGATAGGCTGTCACTGAGGTATGAGAAAGAAGGGAAGCCTTCTGAATTAGCCAGCGTGGACGTATTTGTTAGTACTGTCGATCCGACGAAAGAACCTCCATTGATCACTGCAAATACAGTACTTTCCATCCTTGCAGTCGACTACCCAGTCGATAAAGTTGCATGCTATGTCTCGGATGATGGTGCAGCCATGTTAACATTCGAAGCACTCTCGGAGACATCTGAATTTGCAAGGAAATGGGTCCCTTTCTGTAAGAAATTCAATATCGAGCCCCGTGCCCCCGAGTTTTATTTCTCTCAGAAGATCGATTATTTGAAGAACAAGGTCCACCCAGCATTTGTCAGGGAAAGGCGAGCAATGAAGAGAGAGTACGAAGAGTTTAAGGTTAGGATAAATGCTTTGGTCTCCATGTCTCAAAAGGTTCCCGAGGATGGCTGGACAATGCAAGACGGTACTCCATGGCCTGGGAACAATGTTCGAGACCACCCCGGCATGATTCAGGTTTTCCTTGGCCAGAACGGAGTATGCGACATTGAAGGAAACGAGCTTCCACGTTTGGTTTATGTTTCTCGTGAAAAGCGGCCAGGGTTCGAACATCACAAAAAGGCCGGTGCCATGAATTCACTGATTCGGGTCTCAGCTGTTCTGTCAAACGCTCCCTATCTTCTTAATGTTGACTGTGATCACTACATTAACAATAGCAAGGCACTTAGAGAAGCTATGTGTTTCATGATGGATCCGACATCCGGGAAGAAAGTTTGTTATGTGCAGTTTCCTCAAAGATTCGATGGGATTGATCGACACGATAGATATTCAAACCGGAACGTTGTATTCTTTGATATTAACATGAAAGGATTAGACGGAATACAAGGACCGATATACGTTGGTACGGGATGTGTTTTCCGGAGGGTTGCTCTTTACGGATTTGATGCTCCTGCCGAGAAAAAACCGCCAAGCAAAACATGCAACTGTTTGCCAAAATGGTGCTGTCTATGTTGTGGGTCTAGAAGGAACAAGAAAGGAAAGGCTAAGAATGAGAAAAAGAAGAAGACAAAGCACAGAGAAGCATCAAAGCAGATCCATGCTCTCGAGAACATCGAGGAGGGAATCGAAGAACTAAGCATAGAGAAACTGAGCGTGTCTGAAATAAAACTGGCGAAGAAATATGGGCAATCTCCAGTGTTCGTCGCCTCGACCCTGTTGGAAAATGGAGGCGTTCCTCATGATGTGAGTGCTGCATCTCTTCTAAGAGAAGCCATTCAAGTCATCAGTTGTGGTTATGAAGATAAAACAGAATGGGGGAAAGAGGTTGGCTGGATTTATGGTTCTGTGACTGAAGATATCTTAACTGGATTCAAAATGCACTGTCATGGCTGGCGGTCGGTGTATTGTATTCCGAAGAGACCCGCGTTTAAGGGGTCAGCTCCGATCAATCTCTCAGATCGTCTACACCAAGTTCTTCGGTGGGCTTTAGGATCCGTCGAGATATTCTTGAGCAGACACTGTCCTATCTGGTATGGTTATGGAGGCGGGTTGAAATGGTTGGAACGATTCTCGTACATAAACTCGGTGGTTTATCCGTGGACCTCGATTCCATTGCTCGTGTACTGTAGTCTTCCAGCTATTTGTCTTCTCACTGGAAAATTTATTGTTCCTGAGATTAGCAACTATGCTAGTCTTATTTTCATGGCACTCTTCATTTCAATTGCTGCGACTGGTATCCTCGAGATGCAGTGGGGCGGTGTCGGGATCGACGACTGGTGGAGGAACGAGCAGTTCTGGGTTATCGGAGGCGTTTCGTCGCATCTTTTTGCTCTCTTCCAAGGTCTACTCAAGGTTTTAGCTGGTGTGAGTACCAACTTCACAGTTACATCCAAAGCAGCCGATGATGGTGAATTTTCAGAGCTCTATATTTTCAAGTGGACATCATTGTTAATACCTCCCACGACCTTGTTGATCATAAACATCGTCGGTGTGATCGTCGGGATCTCAGATGCCATCAATAATGGATACGATTCCTGGGGTCCTCTTTTCGGGAGGCTATTTTTCGCTCTTTGGGTGATTATCCACCTCTACCCGTTCCTGAAGGGATTGTTAGGGAAACAGGATCGGATACCGACGATCATCGTTGTTTGGTCCATTCTTTTAGCCTCAATCTTAACATTACTTTGGGTAAGGATCAACCCATTTGTATCCAGAGATGGTCCTGTTTTAGAAGTTTGCGGGTTGAACTGTGATTAG 3249 45.24 MDTAGRLIAGSHNRNEFVLINADETARIKAVKELSGQTCQICGDEVELTVEGELFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVEGDEDEDGIDDLDNEFDYANLDSLGPYHSGEGTYGSYHNMGCGQSELEPSPLGSEIPLLTYGEVDYEISSDQHALVPHFMGQGNRVHPMPFHDPSIPSQPRPMVPQKDIAVYGYGSVAWKDRMEDWKKKQNDKLQVVKHQGVDDGGNDIDDPDLPMMDEARQPLSRKLPISSSRINPYRLIILLRLVILGLFFQYRILHPVKDAYGLWLTSVICEIWFAVSWILDQFPKWCPIERETYLDRLSLRYEKEGKPSELASVDVFVSTVDPTKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEFYFSQKIDYLKNKVHPAFVRERRAMKREYEEFKVRINALVSMSQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVCDIEGNELPRLVYVSREKRPGFEHHKKAGAMNSLIRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKVCYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRVALYGFDAPAEKKPPSKTCNCLPKWCCLCCGSRRNKKGKAKNEKKKKTKHREASKQIHALENIEEGIEELSIEKLSVSEIKLAKKYGQSPVFVASTLLENGGVPHDVSAASLLREAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYGGGLKWLERFSYINSVVYPWTSIPLLVYCSLPAICLLTGKFIVPEISNYASLIFMALFISIAATGILEMQWGGVGIDDWWRNEQFWVIGGVSSHLFALFQGLLKVLAGVSTNFTVTSKAADDGEFSELYIFKWTSLLIPPTTLLIINIVGVIVGISDAINNGYDSWGPLFGRLFFALWVIIHLYPFLKGLLGKQDRIPTIIVVWSILLASILTLLWVRINPFVSRDGPVLEVCGLNCD 1082
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7347798 7354172 - CmaCh03G010670.1 Cma03g01067 290638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01067 1082 SUPERFAMILY RING/U-box 26 111 - -
Cma03g01067 1082 Pfam Zinc-binding RING-finger 29 105 IPR027934 -
Cma03g01067 1082 CDD mRING-HC-C4C4_CesA_plant 37 87 - -
Cma03g01067 1082 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 112 IPR013083 -
Cma03g01067 1082 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Cma03g01067 1082 Pfam Cellulose synthase 355 1070 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cma03g01067 1082 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 510 648 IPR029044 -
Cma03g01067 1082 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 1081 - -
Cma03g01067 1082 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 9 [UDP-FORMING]-RELATED 1 1081 - -
Cma03g01067 1082 SUPERFAMILY Nucleotide-diphospho-sugar transferases 364 900 IPR029044 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g01067 Cma07g00778 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00902 Cma-Chr1:5351284 Cma03g01067 Cma-Chr3:7347798 0 dispersed
Cma03g01067 Cma-Chr3:7347798 Cma09g01181 Cma-Chr9:7489487 0 dispersed
Cma03g01067 Cma-Chr3:7347798 Cma07g00778 Cma-Chr7:3510991 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01067 K10999 - csv:101211094 2058.88