Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01072 ATGGCTTCCAACAACCCTTACATCGTTGCATTCTTCATCCAAATCACCTACGCCGGTATGAGCCTCATGTCCAAGGCCGCCTTCGCCTCTGGTATGAACACTTATATCTTCCTCTTCTATCGTCAAGCTGCTGGTACTCTTGTTTTGGTCCCGCTCACCCTACTCTTAAAAGGGAAGGAGAAGAGGCCGTTGTCTTTGAAGCATTTGTGCCAGATTTTTGTCATTTCATTGATAGGGATCACTCTAGCATTGGATGCATATGGAGTAGCCATTAACTATACGTCGGCAACATTGGGCGCCGCAGCTTTCAATTGCGTTCCTGTCACCACATTCTTCTTCGCACTCATACTAAGAATGGAGAAGGTGAAGCTAAATAAAGCAGCCGGGATAGCAAAGGTGGTGGGCATAATGATATGCATGGCGGGCGCCGCCATTCTAGCTTTCTACAAAGGCCCATATTTAAGCCCAATTTTGAGCCACCACCAACTATTCCACCACGTCCAAACCCAAACACAAACCCACCACCCTCCTACCTCCCAAAACACATGGATGATCGGCTGCTTCTTCCTCCTCGTCACCAGCGTCTCTTGGGGGATCTGGTTCGTTCTCCAGGCTCGATTCTTGAAGGAGTACCCGCACCCGATGGAGTTCATGTGCGCACAGACCGTGATGAGCACGGCTCAGACCTTCGTCGTAGCCATTGCCATGGAAAGAGACCCTTTGGAGTGGAAATTGGGCTGGAATGTTCGACTCTACGCTGTGCTCTACTGTGGTGTGCTAGTCATTGGTGTGGCAAATAATGCCCAATGTTGGGTCATCAGAGAGAAGGGTCCAGTTTTTCAAGCCATGACGACGCCGTTGAACTTAATGGCTACAATAATTGGTTCTCTATTGCTACTTTCTGAAGGAATTTACGTGGGAAGTATAATAGGAGCATCGTTGCTGGTCATGAGTCTTTACAGTGTTTTGTGGGGTAAAAGCAAGGAGCTTGTCACTGCTCCAAACGACCAACAACCGTCTCCACCACTAAAACAGGCTGATGAGTCGACATGTCGTTCTGAAGTCAACTCCACGTTAGTCTAA 1083 48.38 MASNNPYIVAFFIQITYAGMSLMSKAAFASGMNTYIFLFYRQAAGTLVLVPLTLLLKGKEKRPLSLKHLCQIFVISLIGITLALDAYGVAINYTSATLGAAAFNCVPVTTFFFALILRMEKVKLNKAAGIAKVVGIMICMAGAAILAFYKGPYLSPILSHHQLFHHVQTQTQTHHPPTSQNTWMIGCFFLLVTSVSWGIWFVLQARFLKEYPHPMEFMCAQTVMSTAQTFVVAIAMERDPLEWKLGWNVRLYAVLYCGVLVIGVANNAQCWVIREKGPVFQAMTTPLNLMATIIGSLLLLSEGIYVGSIIGASLLVMSLYSVLWGKSKELVTAPNDQQPSPPLKQADESTCRSEVNSTLV 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7376133 7378102 + CmaCh03G010720.1 Cma03g01072 290643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01072 360 Pfam EamA-like transporter family 6 134 IPR000620 GO:0016020|GO:0016021
Cma03g01072 360 Pfam EamA-like transporter family 184 323 IPR000620 GO:0016020|GO:0016021
Cma03g01072 360 SUPERFAMILY Multidrug resistance efflux transporter EmrE 40 149 - -
Cma03g01072 360 MobiDBLite consensus disorder prediction 333 360 - -
Cma03g01072 360 PANTHER WAT1-RELATED PROTEIN 5 338 IPR030184 GO:0016021|GO:0022857
Cma03g01072 360 PANTHER WAT1-RELATED PROTEIN 5 338 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g01072 Cma20g01077 CCT
Cma03g01072 Cma07g00780 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01072 Cma-Chr3:7376133 Cma07g00781 Cma-Chr7:3534105 9.70E-163 dispersed
Cma03g01072 Cma-Chr3:7376133 Cma03g01075 Cma-Chr3:7381658 4.80E-133 proximal
Cma02g00584 Cma-Chr2:3403872 Cma03g01072 Cma-Chr3:7376133 5.33E-108 wgd
Cma20g01077 Cma-Chr20:8164616 Cma03g01072 Cma-Chr3:7376133 1.63E-65 wgd
Cma03g01072 Cma-Chr3:7376133 Cma07g00780 Cma-Chr7:3528513 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01072 - - csv:101205842 558.525