Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01077 ATGGGGCTGGGCAAAGCTGTCAGCCAGGGCTCTCATTTTCTGATTTATTGCTTTAATTCGGTTTCTGCTGATGAGTTTTTGAAAAAGATGGCAGACGCTGAAGATATTCAGCCACTTGTTTGTGACAATGGAACTGGAATGGTGAAGGCTGGCTTTGCTGGTGATGATGCTCCTAGGGCAGTTTTTCCCAGTATTGTTGGTCGTCCCCGACATACTGGTGTCATGGTTGGAATGGGCCAAAAAGATGCCTATGTTGGGGATGAGGCTCAGTCCAAAAGAGGTATCCTTACCTTGAAATATCCCATTGAACACGGTATAGTCAGTAACTGGGATGACATGGAAAAGATTTGGCATCACACATTTTACAATGAACTTCGTGTTGCTCCCGAAGAGCACCCTGTGCTTCTGACTGAGGCTCCACTCAACCCAAAGGCTAACAGAGAAAAGATGACTCAGATCATGTTTGAGACGTTTAATGTGCCTGCTATGTATGTTGCCATCCAGGCTGTTCTGTCCCTCTATGCTAGTGGACGTACAACTGGTATTGTGCTGGATTCTGGTGATGGTGTGAGTCACACCGTTCCCATCTACGAGGGTTATGCCCTCCCTCATGCAATTCTTCGTTTAGACCTTGCTGGTCGTGACCTCACTGATGCTTTGATGAAGATTCTCACCGAAAGAGGTTATATGTTCACCACTACTGCTGAACGGGAAATTGTCCGTGACATGAAGGAGAAGCTGGCATATGTTGCTCTTGACTATGAACAAGAACTCGAGACTGCAAAGAGCAGTTCCTCTATTGAGAAGAACTACGAACTTCCTGATGGACAAGTCATCACCATTGGAGCTGAGAGATTCCGTTGCCCAGAAGTTCTATTCCAACCATCTCTCATCGGTATGGAAGCTGCAGGAATCCACGAAACTACCTACAACTCCATCATGAAGTGTGACGTCGATATCAGAAAGGACCTTTACGGAAACATCGTCCTCAGTGGTGGCTCAACCATGTTCCCTGGCATTGCAGACAGGATGAGCAAGGAAATTACAGCCCTTGCTCCCAGCAGCATGAAGATTAAGGTTGTTGCTCCACCCGAAAGGAAATACAGTGTCTGGATTGGAGGGTCTATTCTCGCATCCCTAAGTACCTTCCAGCAGATGTGGATTTCAAAGGGTGAATATGATGAATCGGGCCCATCCATTGTCCACAGGAAGTGTTTCTGA 1221 46.68 MGLGKAVSQGSHFLIYCFNSVSADEFLKKMADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7386277 7388825 - CmaCh03G010770.1 Cma03g01077 290648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01077 406 PANTHER ACTIN 30 405 - -
Cma03g01077 406 CDD NBD_sugar-kinase_HSP70_actin 39 212 - -
Cma03g01077 406 PANTHER ACTIN 30 405 IPR004000 -
Cma03g01077 406 SUPERFAMILY Actin-like ATPase domain 35 184 IPR043129 -
Cma03g01077 406 SUPERFAMILY Actin-like ATPase domain 177 406 IPR043129 -
Cma03g01077 406 SMART actin_3 36 406 IPR004000 -
Cma03g01077 406 Gene3D - 39 400 - -
Cma03g01077 406 ProSitePatterns Actins signature 2. 387 395 IPR004001 -
Cma03g01077 406 PRINTS Actin signature 92 114 IPR004000 -
Cma03g01077 406 PRINTS Actin signature 171 190 IPR004000 -
Cma03g01077 406 PRINTS Actin signature 267 283 IPR004000 -
Cma03g01077 406 PRINTS Actin signature 146 159 IPR004000 -
Cma03g01077 406 PRINTS Actin signature 57 66 IPR004000 -
Cma03g01077 406 PRINTS Actin signature 80 91 IPR004000 -
Cma03g01077 406 Pfam Actin 34 406 IPR004000 -
Cma03g01077 406 ProSitePatterns Actins signature 1. 84 94 IPR004001 -
Cma03g01077 406 Gene3D Actin; Chain A, domain 4 211 302 - -
Cma03g01077 406 ProSitePatterns Actins and actin-related proteins signature. 135 147 IPR020902 -
Cma03g01077 406 Gene3D - 169 369 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g01077 Cma20g01073 CCT
Cma03g01077 Cma07g00783 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00615 Cma-Chr2:3705529 Cma03g01077 Cma-Chr3:7386277 0 dispersed
Cma03g01077 Cma-Chr3:7386277 Cma06g00102 Cma-Chr6:551928 0 dispersed
Cma04g01178 Cma-Chr4:6002200 Cma03g01077 Cma-Chr3:7386277 4.96E-07 dispersed
Cma20g01073 Cma-Chr20:8126203 Cma03g01077 Cma-Chr3:7386277 0 wgd
Cma03g01077 Cma-Chr3:7386277 Cma07g00783 Cma-Chr7:3541172 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01077 K10355 - csv:101220617 758.059