Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma03g01083 | ATGGTGAAAGATGACTTGTGTATTACGATTCCGAGCGATTTCAGGTGTCCGATCTCGTTAGATGTGATGAAATCTCCGGTCAGTTTGTGCACCGGAGTGACGTACGATCGTTCCAGTATCCAGAAATGGCTCGACAATGGAAACAACACTTGTCCGGCCACCATGCAGGTCCTTCAAACCAAGGAGTTCGTCCCTAACCATAATCTCCACCGCCTCATTCAGATTTGGTCTGATTCACTTCGCCAACGACTGCATTCGCCTGATTCCTCCCCTGTTTCTGACGCGGCTCTCTCCTCAGATCATGCTCTCCGCCTTGTCAAGCGTATGGAGGACGATAAATTACGCGCTGATTCGCTGTCGCGGCTTGTTTCTTTTGCAGCGCAATCGGTGGAGAATCAAAGGCTTCTTTGCGGAATTGACGGCCTCGTGCCGGTTCTTGTCGATCTTCTTGGCAATGTCGATGGCGATGTTTTGGTTGCGCAGACAGTACGGCTGTTGCATTTGATTCGGAATGAGATTGAGGATAAGGAGCGGTTTGCGAAGACGATGTTGAAAAGCGATCGTAATTGTATTTCGTCTCTGCTTTTGATTCTGAGGAAAGAAACCGTCGAATTGAAAATCTGTTCGGTTAATCTGTTAGAGCATCTCGCAATCGACGCCGAGGCGAAGATTGCAATCGCGGAAACAGATGGATTGATGCAAGATTTGCTGAAATTAATGAACTCTGAGAACGATTCAGCCCTAATCGAATCGGTTCTATCGTGCCTAATTTCAATTTCTATGCCGAAACGGATTAAAATCAAATTAGTCCATCTCGGAGTGATTAAATCGGTAACCAAGCTTCTCTCGGAAGCGAACTCGAGTTCGAGCATTTCGATGACGGAGAAGGTTCTGAAAGTGCTGGAAACGGCATCGACGGTGAGGGAAGGGAGGACGGAGATCGGAGAGGACTCCGCGTGCATAGCGGCAATAGTACAGAAGGTGTTGAAAGTATCGAACACAGCGACGGAGCATGCAGTGACAACTCTGTGGAGCATTTGCTATCTGTTCAGAGACGAGAAGGCGGCGGAAGCACTGACGAAGGCGAACGGATTGACGAAGATTTTGCTGTTGATGCAGAGCAACTGCTCGGCGCCGGTCCGGCAGATGGCCAGAGATCTGCTGAAGATTTTCCGGATAAATTCTAAATCGTGCCTGTCGAGTTACGACACGAAAACTACGCATATCATGCCCTGTTGA | 1239 | 48.59 | MVKDDLCITIPSDFRCPISLDVMKSPVSLCTGVTYDRSSIQKWLDNGNNTCPATMQVLQTKEFVPNHNLHRLIQIWSDSLRQRLHSPDSSPVSDAALSSDHALRLVKRMEDDKLRADSLSRLVSFAAQSVENQRLLCGIDGLVPVLVDLLGNVDGDVLVAQTVRLLHLIRNEIEDKERFAKTMLKSDRNCISSLLLILRKETVELKICSVNLLEHLAIDAEAKIAIAETDGLMQDLLKLMNSENDSALIESVLSCLISISMPKRIKIKLVHLGVIKSVTKLLSEANSSSSISMTEKVLKVLETASTVREGRTEIGEDSACIAAIVQKVLKVSNTATEHAVTTLWSICYLFRDEKAAEALTKANGLTKILLLMQSNCSAPVRQMARDLLKIFRINSKSCLSSYDTKTTHIMPC | 412 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 7425706 | 7426944 | + | CmaCh03G010830.1 | Cma03g01083 | 290654 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma03g01083 | 412 | Gene3D | - | 164 | 401 | IPR011989 | - | |
Cma03g01083 | 412 | PANTHER | WDSAM1 PROTEIN | 4 | 412 | IPR045185 | GO:0061630 | |
Cma03g01083 | 412 | SUPERFAMILY | RING/U-box | 6 | 78 | - | - | |
Cma03g01083 | 412 | SUPERFAMILY | ARM repeat | 166 | 398 | IPR016024 | - | |
Cma03g01083 | 412 | ProSiteProfiles | U-box domain profile. | 9 | 83 | IPR003613 | GO:0004842|GO:0016567 | |
Cma03g01083 | 412 | SMART | Ubox_2 | 13 | 76 | IPR003613 | GO:0004842|GO:0016567 | |
Cma03g01083 | 412 | CDD | RING-Ubox_PUB | 14 | 56 | IPR045210 | - | |
Cma03g01083 | 412 | Pfam | U-box domain | 10 | 78 | IPR003613 | GO:0004842|GO:0016567 | |
Cma03g01083 | 412 | PANTHER | U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED | 4 | 412 | - | - | |
Cma03g01083 | 412 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 3 | 104 | IPR013083 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma03g01083 | Cma07g00789 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma03g01083 | Cma-Chr3:7425706 | Cma04g00081 | Cma-Chr4:403222 | 6.43E-41 | dispersed | |
Cma02g00621 | Cma-Chr2:3745813 | Cma03g01083 | Cma-Chr3:7425706 | 9.33E-142 | transposed | |
Cma20g01057 | Cma-Chr20:7960332 | Cma03g01083 | Cma-Chr3:7425706 | 1.29E-37 | wgd | |
Cma03g01083 | Cma-Chr3:7425706 | Cma07g00789 | Cma-Chr7:3573014 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma03g01083 | - | - | cmax:111478747 | 766.148 |