Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01083 ATGGTGAAAGATGACTTGTGTATTACGATTCCGAGCGATTTCAGGTGTCCGATCTCGTTAGATGTGATGAAATCTCCGGTCAGTTTGTGCACCGGAGTGACGTACGATCGTTCCAGTATCCAGAAATGGCTCGACAATGGAAACAACACTTGTCCGGCCACCATGCAGGTCCTTCAAACCAAGGAGTTCGTCCCTAACCATAATCTCCACCGCCTCATTCAGATTTGGTCTGATTCACTTCGCCAACGACTGCATTCGCCTGATTCCTCCCCTGTTTCTGACGCGGCTCTCTCCTCAGATCATGCTCTCCGCCTTGTCAAGCGTATGGAGGACGATAAATTACGCGCTGATTCGCTGTCGCGGCTTGTTTCTTTTGCAGCGCAATCGGTGGAGAATCAAAGGCTTCTTTGCGGAATTGACGGCCTCGTGCCGGTTCTTGTCGATCTTCTTGGCAATGTCGATGGCGATGTTTTGGTTGCGCAGACAGTACGGCTGTTGCATTTGATTCGGAATGAGATTGAGGATAAGGAGCGGTTTGCGAAGACGATGTTGAAAAGCGATCGTAATTGTATTTCGTCTCTGCTTTTGATTCTGAGGAAAGAAACCGTCGAATTGAAAATCTGTTCGGTTAATCTGTTAGAGCATCTCGCAATCGACGCCGAGGCGAAGATTGCAATCGCGGAAACAGATGGATTGATGCAAGATTTGCTGAAATTAATGAACTCTGAGAACGATTCAGCCCTAATCGAATCGGTTCTATCGTGCCTAATTTCAATTTCTATGCCGAAACGGATTAAAATCAAATTAGTCCATCTCGGAGTGATTAAATCGGTAACCAAGCTTCTCTCGGAAGCGAACTCGAGTTCGAGCATTTCGATGACGGAGAAGGTTCTGAAAGTGCTGGAAACGGCATCGACGGTGAGGGAAGGGAGGACGGAGATCGGAGAGGACTCCGCGTGCATAGCGGCAATAGTACAGAAGGTGTTGAAAGTATCGAACACAGCGACGGAGCATGCAGTGACAACTCTGTGGAGCATTTGCTATCTGTTCAGAGACGAGAAGGCGGCGGAAGCACTGACGAAGGCGAACGGATTGACGAAGATTTTGCTGTTGATGCAGAGCAACTGCTCGGCGCCGGTCCGGCAGATGGCCAGAGATCTGCTGAAGATTTTCCGGATAAATTCTAAATCGTGCCTGTCGAGTTACGACACGAAAACTACGCATATCATGCCCTGTTGA 1239 48.59 MVKDDLCITIPSDFRCPISLDVMKSPVSLCTGVTYDRSSIQKWLDNGNNTCPATMQVLQTKEFVPNHNLHRLIQIWSDSLRQRLHSPDSSPVSDAALSSDHALRLVKRMEDDKLRADSLSRLVSFAAQSVENQRLLCGIDGLVPVLVDLLGNVDGDVLVAQTVRLLHLIRNEIEDKERFAKTMLKSDRNCISSLLLILRKETVELKICSVNLLEHLAIDAEAKIAIAETDGLMQDLLKLMNSENDSALIESVLSCLISISMPKRIKIKLVHLGVIKSVTKLLSEANSSSSISMTEKVLKVLETASTVREGRTEIGEDSACIAAIVQKVLKVSNTATEHAVTTLWSICYLFRDEKAAEALTKANGLTKILLLMQSNCSAPVRQMARDLLKIFRINSKSCLSSYDTKTTHIMPC 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7425706 7426944 + CmaCh03G010830.1 Cma03g01083 290654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01083 412 Gene3D - 164 401 IPR011989 -
Cma03g01083 412 PANTHER WDSAM1 PROTEIN 4 412 IPR045185 GO:0061630
Cma03g01083 412 SUPERFAMILY RING/U-box 6 78 - -
Cma03g01083 412 SUPERFAMILY ARM repeat 166 398 IPR016024 -
Cma03g01083 412 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Cma03g01083 412 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Cma03g01083 412 CDD RING-Ubox_PUB 14 56 IPR045210 -
Cma03g01083 412 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Cma03g01083 412 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 4 412 - -
Cma03g01083 412 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 104 IPR013083 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g01083 Cma07g00789 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01083 Cma-Chr3:7425706 Cma04g00081 Cma-Chr4:403222 6.43E-41 dispersed
Cma02g00621 Cma-Chr2:3745813 Cma03g01083 Cma-Chr3:7425706 9.33E-142 transposed
Cma20g01057 Cma-Chr20:7960332 Cma03g01083 Cma-Chr3:7425706 1.29E-37 wgd
Cma03g01083 Cma-Chr3:7425706 Cma07g00789 Cma-Chr7:3573014 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01083 - - cmax:111478747 766.148