Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01085 ATGCTGAGCTCTGATGGAGATGCAGATGTTTTCTTCGACTCAGAAGATTACTTGCCATTGGAGGAGTCCTTGGTAACCGAAGAAGTCGATGTGAGCAAGTCGGGATATGAAATATGGATGAGAGAGCCTCAGAGCATTAAGAAGAGAAGGGAATATTTTCTTCAAGAAGTTGGTTTGAAAGAATTTGCATCTTCTTCAAGTACTCGTACACAGGATTCAGAGATTGAATCTAGTTGTTCATCAGGGAGGATGGAATTGGAGAGACTCACAGAGTGTAGTGGAGCTGTTTCAAGCTCTGACTATGCACCTAGCTGTAATGTAGTAGACAATGATTCAGTAGTACACCACAATGATATGCAAAGTGATGAATTCAGCAACGAGGCAAACGAGGCAACCAGTCGACCATCTTCTGTTTCCAACTCCAGCTTTCAACGATGCCAAGGTGAAGCTAACGTCGAAGCTTGCAAGGATATCGATGCGAGAAAAAAGAAAATACTGACTTGGTGGAAATCCTTAAAAAACAAGGCGGCAAGACTACGAGCTATGGAGTTTTCTGAGGAATCAAAATCAAATCCTGCGAAATCCGAAAGTTGCAGAATGAAGGTGTGCCAAAACAAAAAGAAGTTTTCAGAATTTAGTGCATTGTATATGAGACAGCAGATTTGTGCACACAAGGGCTTGATTTGGACAATGAAGTTTAGTCCAGACGGGAAGTATTTGGCAAGCGGAGGAGAAGACGGAGTCGTTCGCATTTGGCGTGTAACACGTACAAATGCCTCTAGTGAGTTTTTAGCAAATGACGCCACAAGAGAAGGGAAGTCTAGTTTCAGCAGTAAACCGTTAAGATTTGCCACTGTTGTCATTCCTGCTAAGGTTTTTCAGATAGATGAGTTGCCAATACAAGAATTCCATGGACATTCAAGTGATGTCTTGGATATAGCTTGGTCTACTTCAAACTGTCTTCTTTCATCCTCAAAGGATAAAACCGTGCGCTTGTGGCAAGTTGGTTCAGATCAATGTCTCAATGTTTTCCACCATAAAAACTACGTTACTTGTATCCAATTCAATCCAATGGATGAAAACTACTTCGTCAGTGGCTCAATCGATGGAAAAATTCGGATTTGGGGTGTCTTGAAGCAGCGTGTGGTCGATTGGGCTGATATCCGAGATGCAATTACCGCGATATCTTATCAACCAGATGGGAAGGGGTTTGCTGTTGGTTCTATCACTGGCACTTGCCGTTTCTACAAAACATCAGGTGATGATTATATCAATCTGGATGAACAGATCAATATTGGCGGTAGAAATAAAGCATCGGGTAAAAGGATCACTGGCATTCAGTTTTTCCGAGAGAACTCTCATAGAGTGATGATAACTTCGGAAGACTCTAAAGTACGCATATTTGAAGGAACCAAAATTGTCGGCCAATACAAAGGTCTATCGAAGTCGGGTAGTCAGATGTCTGCTTCCTTTACAGAAAATGGAAAACATATAGTATCTGTTGGAGAGGACTCTCGTGTATATATGTGGAACTACGATAGCGTTGGTCTTTCGTCGACGAACGAGACGAAATCTCAGCAGTCTTGTGAGCATTTCTTTTCTGATGGTGTGTCTGTTGCTATACCATGTCCTGGCACTGGAACTGAACCAAAGTGCTTGGGTAACAGCCAATCACAGTTGTCACAGAGACGGGATAACCAAGGGGATGCCAGTGGTTTGGAGTGTTTTTCGTTCAGTAATTGGTTCTCTTCCAATGGTCTGCGCCGAGGTTCTGCAACATGGCCAGAAGAGAGACTACCTCTCTGGGATTTACCAGTTGCAGAAGATGAACACCAAGATTGTCATCAAAAGAAACTAAATGGCCATAATGGCGACGCCCACGACCAAGGATCTCGACTCGAAACATGGGGCCTTGTGATTGTCGTGGCTGGATCAGATGGAACTATAAAGACATTCCACAACTATGGATTGCCCATCAAGTTTTAG 1986 43.0 MLSSDGDADVFFDSEDYLPLEESLVTEEVDVSKSGYEIWMREPQSIKKRREYFLQEVGLKEFASSSSTRTQDSEIESSCSSGRMELERLTECSGAVSSSDYAPSCNVVDNDSVVHHNDMQSDEFSNEANEATSRPSSVSNSSFQRCQGEANVEACKDIDARKKKILTWWKSLKNKAARLRAMEFSEESKSNPAKSESCRMKVCQNKKKFSEFSALYMRQQICAHKGLIWTMKFSPDGKYLASGGEDGVVRIWRVTRTNASSEFLANDATREGKSSFSSKPLRFATVVIPAKVFQIDELPIQEFHGHSSDVLDIAWSTSNCLLSSSKDKTVRLWQVGSDQCLNVFHHKNYVTCIQFNPMDENYFVSGSIDGKIRIWGVLKQRVVDWADIRDAITAISYQPDGKGFAVGSITGTCRFYKTSGDDYINLDEQINIGGRNKASGKRITGIQFFRENSHRVMITSEDSKVRIFEGTKIVGQYKGLSKSGSQMSASFTENGKHIVSVGEDSRVYMWNYDSVGLSSTNETKSQQSCEHFFSDGVSVAIPCPGTGTEPKCLGNSQSQLSQRRDNQGDASGLECFSFSNWFSSNGLRRGSATWPEERLPLWDLPVAEDEHQDCHQKKLNGHNGDAHDQGSRLETWGLVIVVAGSDGTIKTFHNYGLPIKF 661
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7437804 7440454 + CmaCh03G010850.1 Cma03g01085 290656

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01085 661 ProSiteProfiles Trp-Asp (WD) repeats profile. 303 343 IPR001680 GO:0005515
Cma03g01085 661 Gene3D - 205 537 IPR015943 GO:0005515
Cma03g01085 661 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 343 375 - -
Cma03g01085 661 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 303 335 - -
Cma03g01085 661 SUPERFAMILY WD40 repeat-like 215 651 IPR036322 GO:0005515
Cma03g01085 661 Pfam WD domain, G-beta repeat 299 333 IPR001680 GO:0005515
Cma03g01085 661 Pfam WD domain, G-beta repeat 339 375 IPR001680 GO:0005515
Cma03g01085 661 Pfam WD domain, G-beta repeat 223 252 IPR001680 GO:0005515
Cma03g01085 661 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 221 254 - -
Cma03g01085 661 SMART WD40_4 470 511 IPR001680 GO:0005515
Cma03g01085 661 SMART WD40_4 214 253 IPR001680 GO:0005515
Cma03g01085 661 SMART WD40_4 296 334 IPR001680 GO:0005515
Cma03g01085 661 SMART WD40_4 429 469 IPR001680 GO:0005515
Cma03g01085 661 SMART WD40_4 337 376 IPR001680 GO:0005515
Cma03g01085 661 SMART WD40_4 378 417 IPR001680 GO:0005515
Cma03g01085 661 PRINTS G protein beta WD-40 repeat signature 240 254 IPR020472 -
Cma03g01085 661 PRINTS G protein beta WD-40 repeat signature 321 335 IPR020472 -
Cma03g01085 661 PRINTS G protein beta WD-40 repeat signature 363 377 IPR020472 -
Cma03g01085 661 ProSiteProfiles Trp-Asp (WD) repeats profile. 343 375 IPR001680 GO:0005515
Cma03g01085 661 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 5 661 - -
Cma03g01085 661 ProSiteProfiles Trp-Asp (WD) repeats profile. 221 262 IPR001680 GO:0005515
Cma03g01085 661 MobiDBLite consensus disorder prediction 124 142 - -
Cma03g01085 661 ProSiteProfiles Trp-Asp (WD) repeats profile. 488 520 IPR001680 GO:0005515
Cma03g01085 661 PANTHER WD REPEAT DOMAIN 44 5 661 IPR040324 -
Cma03g01085 661 MobiDBLite consensus disorder prediction 121 142 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01085 K20241 WDR44, RAB11BP; WD repeat-containing protein 44 - csv:101207772 1060.06
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma03g01085 Cma07g00791 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01085 Cma-Chr3:7437804 Cma15g01017 Cma-Chr15:6290271 2.99E-136 dispersed
Cma03g01085 Cma-Chr3:7437804 Cma07g00791 Cma-Chr7:3588454 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1267 Blo04g00968 . . Bda10g00359 Bpe15g00398 . . . . . Cma03g01085 Cma07g00791 Car03g00975 Car07g00777 . . . Bhi03g01375 . . . Hepe04g1122 . . Cla01g01526 Cam01g1596 Cec04g1240 Cco04g1310 Clacu01g1620 Cmu01g1506 Cre04g1185 . . Cone6ag1293 . Lsi01g01138 . . Cme08g01072 . . . Bda14g01058 . Bpe06g00273 Bma03g01033 Bma06g00513 . Cmo03g01072 Cmo07g00814 . . . . . . . . . . . . . . . . . . . . . Csa06g02793 Chy02g01042 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003346 3 4 4 4 4 1 2 1 1 1 1 1 2 1 1 2 1 2 0 1 1 1 1 1 1 1 1 3 1 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma03g01085 Cma_Chr03 FPKM 5.587613 6.048693 10.267711 11.604551 4.475441 4.766938 4.379342 8.792447 8.111806 9.808582