Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01087 ATGGCAATACCCATGTCCCTTATTCCCTGTTCCAGTTTTGCTTCTTATTCTTCCTCCTCGTTTCCATTGCAATCTCGTAATCCCTTCAAGCCCCATCGCCATGGTTTAAAGACGGATAATCCCACCTCAAATGGGTCGCTCGTTGTTAGCTGTTCCGGTCGCGAACTGGGTTCCAACTCTGACCCTTTGAACGGAAGCATGAAGCATCAGATATCATCTATGGCTCCTAGCGGGATGACACTAAATGAAGCTTCCATGTCCATGCCATCGTATAAATGGCGAAGAGTATTGCTTAAAGTAAGCGGTGAAGCACTTGCTGGTGATCGGTTGCAGAATATTGATCCGAAGGTTACTATGGCGATTGCGAGGGAGGTTGCAGCTGTAACGCGTCTGGGCATTGAGGTTGCTATAGTAGTCGGTGGGGGTAACATTTTCCGTGGATCGTCGTGGGCTGGATGTAGTGGCTTAGACCGTTCATCTGCTGATTACATTGGGATGTTGGCAACAGTGATGAATGCTATATTTCTTCAAGCCACAATGGAGAGTATAGGCATTCCCACACGAGTGCAGACGGCGTTTCGTATGTCTGAGGTTGCGGAGCCATATATTCGACGTAGGGCTGTGAGGCACTTGGAAAAAGGCAGAGTTGTGATCTTTGCAGCTGGTATAGGCAATCCGTTTTTCACTACAGATACTGCAGCGGCCCTCCGTTGCGCAGAAATTAATGCAGAAGTTCTGCTGAAAGCAACAAACGTTGACGGGGTTTATGATGATGATCCGAAACAAAACACGAATGCACGTCTACTCGAGAATCTTTCATACCAGGAAGTGACGTCGAAGGACCTTTCAGTGATGGATATGACAGCGATTACTCTATGCCAGGAAAACAACATTCCTGTTGTTGTCTTCAATCTAACAAAACCTGACAACATCTCGAAAGCCATAAAGGGCGAGAGAGTCGGGACGTTGATCGGAGGAACATGGAACTCAAACGTAACAATCTTCGCTCTCTTTCCGCCATTAACAATGACGAAGTTCAGAAAGCTTGGTCGACCTGCAGCTCACCGAATGTCTATGCTGAGAACAATGGTTTCTCAGTTGGTGAAGCACGAGCGGATTGAGACTACTGTTGCGAAGGCTAAAGAAATTCGGCGGCTTGCTGATAACATGGTTCAATTTGGAAAAGAGGGTTCCCTTTGTGCTGCAAGGCATGCTGCTGCATTTGTAAGAGGCGATGATGTCCTTCACAAACTATTCACAGAACTGGCTTATCGATACAAAGATAGAGCTGGTGGATATACAAGACTTCTTCGGACACGTATACGTGTTGGCGATGCTGCACCAATGGCTTATATAGAATTTATTGATAGAGAAAATGAGCTGAGGCAGTCGAAGCCTCCAAATCCCCAACCACCTCAGAAGGCTCCAATGGATCCATGGACAAGATCACGGCTTAGCAAGCAGTTCGCACCACCCAAAGAGATCAAATCTGACTCTGAAATCTGA 1506 46.75 MAIPMSLIPCSSFASYSSSSFPLQSRNPFKPHRHGLKTDNPTSNGSLVVSCSGRELGSNSDPLNGSMKHQISSMAPSGMTLNEASMSMPSYKWRRVLLKVSGEALAGDRLQNIDPKVTMAIAREVAAVTRLGIEVAIVVGGGNIFRGSSWAGCSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGIGNPFFTTDTAAALRCAEINAEVLLKATNVDGVYDDDPKQNTNARLLENLSYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLTKPDNISKAIKGERVGTLIGGTWNSNVTIFALFPPLTMTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQFGKEGSLCAARHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7441160 7449608 + CmaCh03G010870.1 Cma03g01087 290658

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01087 501 MobiDBLite consensus disorder prediction 458 501 - -
Cma03g01087 501 TIGRFAM pyrH_bact: UMP kinase 94 324 IPR015963 GO:0005737|GO:0006221|GO:0033862
Cma03g01087 501 CDD AAK_UMPK-PyrH-Ec 94 325 IPR015963 GO:0005737|GO:0006221|GO:0033862
Cma03g01087 501 SUPERFAMILY Prokaryotic ribosomal protein L17 344 458 IPR036373 GO:0003735|GO:0005840|GO:0006412
Cma03g01087 501 Gene3D Ribosomal protein L17 342 455 IPR036373 GO:0003735|GO:0005840|GO:0006412
Cma03g01087 501 Hamap 50S ribosomal protein L17 [rplQ]. 344 455 IPR000456 GO:0003735|GO:0005840|GO:0006412
Cma03g01087 501 PANTHER URIDYLATE KINASE 77 327 - -
Cma03g01087 501 TIGRFAM L17: ribosomal protein bL17 346 456 IPR000456 GO:0003735|GO:0005840|GO:0006412
Cma03g01087 501 Hamap Uridylate kinase [pyrH]. 91 325 IPR015963 GO:0005737|GO:0006221|GO:0033862
Cma03g01087 501 SUPERFAMILY Carbamate kinase-like 91 324 IPR036393 -
Cma03g01087 501 Pfam Ribosomal protein L17 359 455 IPR000456 GO:0003735|GO:0005840|GO:0006412
Cma03g01087 501 Pfam Amino acid kinase family 95 304 IPR001048 -
Cma03g01087 501 Gene3D - 85 329 IPR036393 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01087 K09903 pyrH; uridylate kinase [EC:2.7.4.22] - csv:101221565 562.377
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01087 Cma-Chr3:7441160 Cma14g00262 Cma-Chr14:1132066 6.82E-94 dispersed
Cma06g00179 Cma-Chr6:918478 Cma03g01087 Cma-Chr3:7441160 1.30E-27 transposed
Cma03g01087 Cma-Chr3:7441160 Cma07g00792 Cma-Chr7:3592281 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1276 . . . . . . . . . . Cma03g01087 . Car03g00977 . Sed14g0216 . . Bhi03g01372 Tan03g1320 Cmetu08g1085 . . . . Cla01g01524 Cam01g1594 Cec04g1238 Cco04g1308 . . Cre04g1183 . . . . Lsi01g01140 . . Cme08g01075 . . . . . . . . . Cmo03g01073 . . . . . . . . . . . . . . . . . . . . . . Csa06g02791 Chy02g01044 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007541 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma03g01087 Cma_Chr03 FPKM 11.40603 13.069587 17.030294 16.921013 25.996416 28.519093 26.41778 24.243792 23.820587 23.544628