Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma03g01089 | ATGGAAGACCATCATATCCTTCACCGTCATCACCACGCCCACGTCCACGACCCTGACCCTGACCCTGACCCTGATTCCATTTGGTCGTCGTTGTTGCCTTTTCATCTCTCCGACCCTCATCAACAATTCCCTAGCTCCTCAACCCACCTGTTGATCAGCTACGCTACTCCGAGTTCTAGGATAGATACTGACGAAGAGCCAGAAGAAGAGCTTGGTGCCATGAAAGAGATGATGTATAAGATGGCCGCGATGCAACCGGTGGATATCGACCCTTCGACTATCCGAAAGCCCAAGCGACGAAATGTACGGATTAGCGATGACCCACAAAGCATTGCAGCTCGTCTTCGACGAGAGAGAATCAGTGAGAAGATTAGAATTCTTCAAAGGCTTGTGCCTGGAGGGACGAAGATGGACACAGCTTCAATGTTGGATGAAGCAATTCGCTATGTCAAGTTCTTAAAGAGGCAAATCCGGTTGCTGCAGTCAAGTGATCAGCCACAACAGCCAAGCACTGACGGCGGAGCCGCCGCTGGAGGGTGGCCTCTTACATTCCATAAGGCTGATGGCTCAGCCTCCTCGTCCACGTCCATGGAGACTACGCCTGCCATTATTACACCATCAGGATGGTGA | 630 | 51.43 | MEDHHILHRHHHAHVHDPDPDPDPDSIWSSLLPFHLSDPHQQFPSSSTHLLISYATPSSRIDTDEEPEEELGAMKEMMYKMAAMQPVDIDPSTIRKPKRRNVRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSSDQPQQPSTDGGAAAGGWPLTFHKADGSASSSTSMETTPAIITPSGW | 209 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 7466835 | 7467545 | + | CmaCh03G010890.1 | Cma03g01089 | 290660 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma03g01089 | 209 | SMART | finulus | 110 | 159 | IPR011598 | GO:0046983 | |
Cma03g01089 | 209 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 9 | 202 | IPR045843 | GO:0003700|GO:0006355 | |
Cma03g01089 | 209 | MobiDBLite | consensus disorder prediction | 187 | 209 | - | - | |
Cma03g01089 | 209 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 104 | 153 | IPR011598 | GO:0046983 | |
Cma03g01089 | 209 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 109 | 165 | IPR036638 | GO:0046983 | |
Cma03g01089 | 209 | Gene3D | - | 107 | 171 | IPR036638 | GO:0046983 | |
Cma03g01089 | 209 | Pfam | Helix-loop-helix DNA-binding domain | 113 | 153 | IPR011598 | GO:0046983 | |
Cma03g01089 | 209 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 9 | 202 | - | - | |
Cma03g01089 | 209 | CDD | bHLH_AtIND_like | 105 | 165 | - | - | |
Cma03g01089 | 209 | MobiDBLite | consensus disorder prediction | 161 | 209 | - | - | |
Cma03g01089 | 209 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma03g01089 | Cma07g00796 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma03g00338 | Cma-Chr3:4099121 | Cma03g01089 | Cma-Chr3:7466835 | 2.48E-23 | dispersed | |
Cma03g01089 | Cma-Chr3:7466835 | Cma05g00179 | Cma-Chr5:758601 | 7.74E-39 | dispersed | |
Cma18g00526 | Cma-Chr18:3275985 | Cma03g01089 | Cma-Chr3:7466835 | 1.74E-13 | dispersed | |
Cma02g00577 | Cma-Chr2:3330367 | Cma03g01089 | Cma-Chr3:7466835 | 5.58E-46 | wgd | |
Cma03g01089 | Cma-Chr3:7466835 | Cma07g00796 | Cma-Chr7:3617126 | 5.76E-83 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34686 | PF00010 | HLH | 1.20E-06 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma03g01089 | - | - | bhj:120073523 | 290.812 |