Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01089 ATGGAAGACCATCATATCCTTCACCGTCATCACCACGCCCACGTCCACGACCCTGACCCTGACCCTGACCCTGATTCCATTTGGTCGTCGTTGTTGCCTTTTCATCTCTCCGACCCTCATCAACAATTCCCTAGCTCCTCAACCCACCTGTTGATCAGCTACGCTACTCCGAGTTCTAGGATAGATACTGACGAAGAGCCAGAAGAAGAGCTTGGTGCCATGAAAGAGATGATGTATAAGATGGCCGCGATGCAACCGGTGGATATCGACCCTTCGACTATCCGAAAGCCCAAGCGACGAAATGTACGGATTAGCGATGACCCACAAAGCATTGCAGCTCGTCTTCGACGAGAGAGAATCAGTGAGAAGATTAGAATTCTTCAAAGGCTTGTGCCTGGAGGGACGAAGATGGACACAGCTTCAATGTTGGATGAAGCAATTCGCTATGTCAAGTTCTTAAAGAGGCAAATCCGGTTGCTGCAGTCAAGTGATCAGCCACAACAGCCAAGCACTGACGGCGGAGCCGCCGCTGGAGGGTGGCCTCTTACATTCCATAAGGCTGATGGCTCAGCCTCCTCGTCCACGTCCATGGAGACTACGCCTGCCATTATTACACCATCAGGATGGTGA 630 51.43 MEDHHILHRHHHAHVHDPDPDPDPDSIWSSLLPFHLSDPHQQFPSSSTHLLISYATPSSRIDTDEEPEEELGAMKEMMYKMAAMQPVDIDPSTIRKPKRRNVRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSSDQPQQPSTDGGAAAGGWPLTFHKADGSASSSTSMETTPAIITPSGW 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7466835 7467545 + CmaCh03G010890.1 Cma03g01089 290660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01089 209 SMART finulus 110 159 IPR011598 GO:0046983
Cma03g01089 209 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 9 202 IPR045843 GO:0003700|GO:0006355
Cma03g01089 209 MobiDBLite consensus disorder prediction 187 209 - -
Cma03g01089 209 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 104 153 IPR011598 GO:0046983
Cma03g01089 209 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 109 165 IPR036638 GO:0046983
Cma03g01089 209 Gene3D - 107 171 IPR036638 GO:0046983
Cma03g01089 209 Pfam Helix-loop-helix DNA-binding domain 113 153 IPR011598 GO:0046983
Cma03g01089 209 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 9 202 - -
Cma03g01089 209 CDD bHLH_AtIND_like 105 165 - -
Cma03g01089 209 MobiDBLite consensus disorder prediction 161 209 - -
Cma03g01089 209 MobiDBLite consensus disorder prediction 1 23 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g01089 Cma07g00796 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00338 Cma-Chr3:4099121 Cma03g01089 Cma-Chr3:7466835 2.48E-23 dispersed
Cma03g01089 Cma-Chr3:7466835 Cma05g00179 Cma-Chr5:758601 7.74E-39 dispersed
Cma18g00526 Cma-Chr18:3275985 Cma03g01089 Cma-Chr3:7466835 1.74E-13 dispersed
Cma02g00577 Cma-Chr2:3330367 Cma03g01089 Cma-Chr3:7466835 5.58E-46 wgd
Cma03g01089 Cma-Chr3:7466835 Cma07g00796 Cma-Chr7:3617126 5.76E-83 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34686 PF00010 HLH 1.20E-06 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01089 - - bhj:120073523 290.812