Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01090 ATGAAGGGTGGGACGCTTCAGATCAACTGGCACGACTCAAAGCCAGTGCTCACCCTAGACTTCCATCCACNTTCAGGTCTCCTCGCAACCGGCGGAGCGGATTTCGATATCAAGATTTGGTTATTAAATTCAGGGGATGGACAAAAAAATGTCCCTGGTGCTACGTATCAAAATAGCCTTTCTTACCATGGTTCGGCTGTTAATAGCCTGCGCTTCTCACCTTCAGGAGAACTGCTTGCCTCTGGTGCTGATGGAGGTGAACTGATCATATGGAAATTGCACCATTTGGAAAGTGGCCAAACTTGGAAGGTCCTGAAGACATTATCATTTCACCGCAAAGATGTGCTGGACCTACAGTGGTCTAGTGATGGTGCATATTTGATGTCTGGATCCGTAGATAATTCCTGCATTATATGGGATGTAAGCAAAGGATCTGTCCATCAGATTTTAGATGCCCATTTGCACTATGTTCAAGGTGTGGCATTGGACCCACTGGGAAAGTATGCTGCTTCTCTGAGTTCAGATAGAAGTTGCAGAATCTATGCCTATAAACCCCCAACCAAAGTAAAAAGCAGTGAGAAAATGAATTATGTTTGTCAGCATGTCGTTACTAAGGCAGAAAATATTTCAGTTGATGATTCTAAGTCTGTCAGAAACCACCTCTTTCATGATGAGACATTGCCATCTTTCTTCCGAAGGTTGGCCTGGTCACCTGATGGATCTTTTCTACTTGTGCCTGCAGGTGTTTGTAAAATATCGCCGGCATCTGAACCAGTAAATACAGCGTATATATTTTCTAGAAAGGATCTCTCAAGGCCTGCTATTCAACTCCCTGGTGCCAGCAAGCCGGTTGTAGCAGTTTGCTTTTGTCCAAAGCTTTTTAGTCTTAGAGGATTAAATTCAGCTGGGTTATTTAAGCTTCCACATCGGATCATCTTTGCATTAGCAACTTTAAATTCTTTGTACATATATGACACTGAAAGTGTTGTGCCGCTAGTCATTATGGCTGGTCTTCACTATGCTGCCATAACAGATGTCGCGTGGTCGGCAGATGCTCATTATTTAGCACTATCTTCTCAAGATGGTTACTGCACTTTGGTGGAATTTGAAAACGATGAACTGGGGTCACCACTTTCTCTATTAGAAGATAAAATAGGCACGTCAACCAATCAGAATACGAGTTTAACAGGCGTGGTGACTGTAAACGACGATCAAAATAGGAAAACAGAAGTAGAAGAGAGACATGAAGAAAACAAAAGCGTTGAAAAACCAGAAAATAAAAGCGTTGAAAAACCAGAAAACATGGTGATTGAAAAACCTTCGAGTGGAGAAAATCTTGCAGAATCAGAGTGCAGAGGACATGAAATGGAAAAGAAGAAAAGTAAACAGGTATCTATAAGCTCTTCAAGCAACTCTGTTACCAGCAAGCCAGCCAAAAGGCGCATTACACCCATGGCTATTGATCCATGA 1470 42.38 MKGGTLQINWHDSKPVLTLDFHPXSGLLATGGADFDIKIWLLNSGDGQKNVPGATYQNSLSYHGSAVNSLRFSPSGELLASGADGGELIIWKLHHLESGQTWKVLKTLSFHRKDVLDLQWSSDGAYLMSGSVDNSCIIWDVSKGSVHQILDAHLHYVQGVALDPLGKYAASLSSDRSCRIYAYKPPTKVKSSEKMNYVCQHVVTKAENISVDDSKSVRNHLFHDETLPSFFRRLAWSPDGSFLLVPAGVCKISPASEPVNTAYIFSRKDLSRPAIQLPGASKPVVAVCFCPKLFSLRGLNSAGLFKLPHRIIFALATLNSLYIYDTESVVPLVIMAGLHYAAITDVAWSADAHYLALSSQDGYCTLVEFENDELGSPLSLLEDKIGTSTNQNTSLTGVVTVNDDQNRKTEVEERHEENKSVEKPENKSVEKPENMVIEKPSSGENLAESECRGHEMEKKKSKQVSISSSSNSVTSKPAKRRITPMAIDP 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7468367 7472770 + CmaCh03G010900.1 Cma03g01090 290661

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01090 489 MobiDBLite consensus disorder prediction 391 489 - -
Cma03g01090 489 ProSiteProfiles Trp-Asp (WD) repeats profile. 16 50 IPR001680 GO:0005515
Cma03g01090 489 Pfam WD domain, G-beta repeat 102 140 IPR001680 GO:0005515
Cma03g01090 489 Pfam WD domain, G-beta repeat 58 92 IPR001680 GO:0005515
Cma03g01090 489 Pfam WD domain, G-beta repeat 11 40 IPR001680 GO:0005515
Cma03g01090 489 PANTHER CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B 1 475 - -
Cma03g01090 489 SMART WD40_4 143 182 IPR001680 GO:0005515
Cma03g01090 489 SMART WD40_4 53 92 IPR001680 GO:0005515
Cma03g01090 489 SMART WD40_4 328 368 IPR001680 GO:0005515
Cma03g01090 489 SMART WD40_4 3 41 IPR001680 GO:0005515
Cma03g01090 489 SMART WD40_4 101 140 IPR001680 GO:0005515
Cma03g01090 489 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 108 145 - -
Cma03g01090 489 MobiDBLite consensus disorder prediction 463 478 - -
Cma03g01090 489 ProSiteProfiles Trp-Asp (WD) repeats profile. 108 149 IPR001680 GO:0005515
Cma03g01090 489 PANTHER CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B 1 475 IPR045145 GO:0006335
Cma03g01090 489 MobiDBLite consensus disorder prediction 405 434 - -
Cma03g01090 489 ProSitePatterns Trp-Asp (WD) repeats signature. 127 141 IPR019775 -
Cma03g01090 489 Gene3D - 4 226 IPR015943 GO:0005515
Cma03g01090 489 ProSiteProfiles Trp-Asp (WD) repeats profile. 60 101 IPR001680 GO:0005515
Cma03g01090 489 SUPERFAMILY WD40 repeat-like 8 366 IPR036322 GO:0005515
Cma03g01090 489 MobiDBLite consensus disorder prediction 448 462 - -
Cma03g01090 489 Gene3D - 229 421 IPR015943 GO:0005515
Cma03g01090 489 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 60 93 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01090 K10751 CHAF1B; chromatin assembly factor 1 subunit B - csv:101222502 832.017
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01331 Cma-Chr2:7786096 Cma03g01090 Cma-Chr3:7468367 6.00E-31 dispersed
Cma03g01090 Cma-Chr3:7468367 Cma20g00171 Cma-Chr20:824360 6.69E-34 dispersed
Cma03g01090 Cma-Chr3:7468367 Cma07g00797 Cma-Chr7:3623290 1.50E-38 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1283 . . . . . . . . . . Cma03g01090 . Car03g00981 . Sed10g0499 . Cpe10g00342 Bhi03g01357 Tan03g1314 Cmetu08g0769 . Hepe04g1117 . . Cla01g01520 . . . . . . . . Cone6ag1289 . Lsi01g01145 . . Cme08g01079 . Blo06g00198 . . . . . . . Cmo03g01076 . . . . . . . . . . . . . . . . . . . . . . Csa06g02786 Chy02g01049 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011096 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma03g01090 Cma_Chr03 FPKM 6.869303 8.634055 9.380975 9.147618 14.133862 13.589872 13.143052 7.602678 6.035958 6.868685