Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01091 ATGTCGAAAAAAGCTCTCAACCTCGCCGGAGAAGATGCAGAAAGTGCTAGCACTGAACGTAATGTAGCCAGAAGTTCCGGAGGTTGGGGGCGGTGGAGGTCATTTCAGACGATGGAAAAGGACGGCGCTCTGTTTCTCGGCACGGCGGAGGAAAGGCTGGTTTGGCTGCGATGTCAGATTATAGGTAGAGATGCAGAGTTTAATTCTCCATTTGGAGAAAGAAGAGTCTGTTATGCTGATCATACAGCTTCTGGTCGTTCTCTTAGTTATATCGAAGATTTCATCCTCCAAAACGTTCTACCTTTCTATGGCAACACTCACACAAGCAACAGCTACGTCGGGCAGCATACAACAAAGATGGCGAACGATGCGAACGCATACATCAAGAAGTGCTTAGGAGGTGGAGAAGAAGAAGCGCTTGTGTTCTGTGGCCAAGGCGCAACTTCCGCCATTAAAAGACTGCAAGAAGTGATGGGAATTGCAGTGCCATCCATTCTGAGACACAGGGTAATAGGGACCCTAAAGGAAGAAGAAAGGTGGGTTGTTTTTGTTGGACCTTATGAGCATCACTCCAACCTCCTCTCATGGCGGCAGAGCTTGGCGGAAGTGGTAGAAATTGGAATGGATGAAAATGGGGTTTTAGACATTGAGATGCTCAGATCCCAACTTGAGACGTATAAGAAAGCTGGAAAGAGGCTGATTTTGGGTTCTTTCTCAGCTTGTAGTAATGTCACAGGAATTTATTCAGATACAAAAGCTATTGCTACACTGATCCATGAATATGGAGGCCATGTTTGCTTTGATTTTGCTGCAAGTGGCCCTTATGTGCAAATAGATATGCAATCAGGGGAAATTGATGGCTATGATGCGATTGTTCTAAGTACTCACAAGTTTCTTGGAGGGCCTGGATCACCTGGAATCCTTCTGATGAACAAAAGTCTCTATAAGTTGAAGTCATCTCCTCCATCAACTTGTGGGGGTGGTACTGTGAACTATGTCAATGGCTTCAGTGAAAAGGACACACTGTATAATGAAGACATAGAAGAGAGGGAAAACGGTGGAACACCACAGATTATAGGAATAATAAGAGCAGCTATGGCTTTTGAGGTAAAGGAATATATCAGCAACCAAGAGATAGAGAAGCAAGAACACCAGTACGTAGAAAGGGCTTTGAAGAGACTTCTCCCAAATAGAAGCATCTGCATTTTAGGGAGCACGTCTTATAAGCGACAAGCCATATTATCTTTTATCATTTACTCTTCGGCTAATTCGTCCCCCAACTGTATCACTAACAGATTATGTAAACCTAACAGCAGAGAAAAGGCTGAAAAGCTTTATATGTGGAAAGAGACAGGGTATATGAGAGCAAAACCTCTTCATGGTTCTTTTGTTGCAGCACTCCTGAGCGATCTGTTCGGCATTCAGGCTCGAGGAGGATGCAGTTGTGCCGGTCCCTATGGTCACAAGCTGCTCAACATTGATGAAAAATGCTCACATGCCTACAGATCTGCCATTGCCAAGGGCTATGCTGGAATGAAACCTGGATGGACAAGAATAAGCTTTGCCTACTACATGCCAAATGAGGAGTTCGAGTTCATTTTAAAAGCTTTAGAATTCATAGCTGATTATGGACAAAGATTCCTTCCTTTGTATGCCTTCAATTTGCGAACTGGCAGCTGGACACCGAAGAAAAAGGAGCTCGCCGACCTACTCGGGAAGGAGAATTACAGGAACAGTCACATCTTAGCATTCAAAAACAGGTGCGCCAATGCAGAAGCTAAGTTAGCAGCCACAGTAAACAAGCATAAATCATATTTAGAATCTGCCAAAAAAACCGCAAATCTTCTCCCCAAGTTTCCCCCTGAGAGAAAGCTTCACGAGGACATTGAATCCTCTCTATTATACTTCAGAATCTAG 1917 44.08 MSKKALNLAGEDAESASTERNVARSSGGWGRWRSFQTMEKDGALFLGTAEERLVWLRCQIIGRDAEFNSPFGERRVCYADHTASGRSLSYIEDFILQNVLPFYGNTHTSNSYVGQHTTKMANDANAYIKKCLGGGEEEALVFCGQGATSAIKRLQEVMGIAVPSILRHRVIGTLKEEERWVVFVGPYEHHSNLLSWRQSLAEVVEIGMDENGVLDIEMLRSQLETYKKAGKRLILGSFSACSNVTGIYSDTKAIATLIHEYGGHVCFDFAASGPYVQIDMQSGEIDGYDAIVLSTHKFLGGPGSPGILLMNKSLYKLKSSPPSTCGGGTVNYVNGFSEKDTLYNEDIEERENGGTPQIIGIIRAAMAFEVKEYISNQEIEKQEHQYVERALKRLLPNRSICILGSTSYKRQAILSFIIYSSANSSPNCITNRLCKPNSREKAEKLYMWKETGYMRAKPLHGSFVAALLSDLFGIQARGGCSCAGPYGHKLLNIDEKCSHAYRSAIAKGYAGMKPGWTRISFAYYMPNEEFEFILKALEFIADYGQRFLPLYAFNLRTGSWTPKKKELADLLGKENYRNSHILAFKNRCANAEAKLAATVNKHKSYLESAKKTANLLPKFPPERKLHEDIESSLLYFRI 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7477736 7480176 + CmaCh03G010910.1 Cma03g01091 290662

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01091 638 Gene3D Aspartate Aminotransferase, domain 1 370 544 IPR015422 GO:0003824
Cma03g01091 638 SUPERFAMILY PLP-dependent transferases 70 538 IPR015424 -
Cma03g01091 638 PANTHER CYSTEINE DESULFURASE 15 638 - -
Cma03g01091 638 Pfam Aminotransferase class-V 93 418 IPR000192 -
Cma03g01091 638 PANTHER - 15 638 - -
Cma03g01091 638 Gene3D - 90 369 IPR015421 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01091 - - - cmax:111497234 1061.21
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01091 Cma-Chr3:7477736 Cma07g00799 Cma-Chr7:3639736 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1290 . . . . . . . Bma15g00794 . . Cma03g01091 . Car03g00983 . . Cpe19g00531 Cpe10g00339 . . . . . . . Cla01g01518 Cam01g1588 Cec04g1231 Cco04g1302 Clacu01g1613 Cmu01g1499 Cre04g1177 . . . . Lsi01g01147 . . Cme08g01081 . Blo06g00197 . . . . . . . Cmo03g01077 . . . . . . . . . . . . . . . . . . . . . . Csa06g02784 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005411 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 3 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma03g01091 Cma_Chr03 FPKM 0.989644 0.981414 0.0 0.147355 2.195323 1.63249 1.866215 0.0 0.0 0.0