Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma03g01097 | ATGCCGGCTTGGTGGGGAAGAAAATCGAGTAAAAACAAGGACCATCACAATCATCCCACTACCTTTCTCAACTTCTTCAACTCTTCTTCTTCTTCTTCTTCCCCCAAAACTGAACCTAAGAACGCCAGCGACAAACCCAGGAGCTTCGATGAGGTCTCTCCTGGGATTTTCTCTCGCAATTCCCCCAGGTCTAGCAGGGATCTGGGCACTTCTGGTGCCGCCTCTTTTGAGTTTTCCGGTTTTGACTCCGATAGTGGAGATACCAGTGTTCCTCTTCCTCGACCTACTACTTCCGGCCTTGGGATTGATCATGGAGTCGGGAATGGATCTGGGTCTGTTTCGGTTTCAAGTGTTAGCTCCTCTGGCTCTTCCGATGATCATCCATCTGCTCAAGAACACCTTCAATTTGGAGGTCTCAGAGGATTTGCTGATACAAGACCAGAGAAAAGGCCAAGAAGTCCAGGTCCAGGATCAAGAGGACCCACCAGTCCTACATCGCCTCTCAACCCGCGGTTCTGTGGCATGAGTTTGGAGTCTCCTACAGGCAAGCTAGATGACGGGATGAATCGATGTCACAAGCTGCCGCTACCTCCAAGTTCTCCCACCAGCCCGTCTTCCTTGACCAGCACGAGAGCTATCAATATCGGCGATAACAATGTTGCTACACAACCGAAGTGGAAGAAAGGAAGGCTTCTAGGAAGGGGAACGTTTGGGCACGTTTACCTTGGATTTAACAGTGTAAGTGGCCAAATGTGTGCAATCAAGGAGGTCAGGGTTATAAGCGATGATTCGACGTCGAAGGAATGTCTCAAGCAATTGAACCAGGAGATTACCGTGCTCAGTCAGCTGTCGCATCCAAACATCGTCCAGTACTATGGTAGTGAAATGGGTGATGAGTCCCTCTCGGTCTATTTAGAATACGTCTCTGGTGGCTCAATTCACAAGTTACTTCAGGAATACGGTGCCTTCAAAGAACCTGTCGTAAGAAACTATACCCGAAAGATCCTTTCCGGGCTTGCTTATCTGCACGGGAGAAACACAGTGCATAGGGACATAAAAGGGGCAAATATCTTAGTCGATCCGAACGGCCAGGTCAAGTTGGTGGACTTTGGCATGGCTAAACATATTACGAATTGTACTTCGATGCTCTCCTTCAAAGGTAGTCCTTATTGGATGGCCCCCGAGGTTGTAATGAATACAAATGGCTACAGTCTTGCTGTAGACATTTGGAGTTTAGGGTGCACTGTTCTTGAAATGGCAACGTCCAAACCGCCTTGGAGCAAATACGAAGGGGTGGCTGCAATTTTCAAAATTGGGAATAGTAAAGACATTCCAGAAATTCCAGACCATCTCTCGAACGATGCTAAAAGTTTCGTGCAATTATGCTTGCAACGGGACCCGGCTGCACGTCCTTCGGCTGCAGAACTACTGGATCACCCTTTTGTTCAAGATGCAGTAACACCAAGAGCGTCCGATGTTAACTTGTCCATGGATGCATTCCTGTTTAGTTTCGATGGAAGCCAGACTCCGCCATTGTTAGATCGGCATCCAAACCGAAAAAGTATAAGCATATGCGATGGAGATTATGCGACGAACCCAACAATCTCTTCGAGAACTTCGAGGAGTCCTAGGGGAAACGCAAGATTGATCACATCCTTGCCTGTCTCTCCTAGTTCAAGTCCATTACGGTCGTATGGCCCCGCACACCAGAGCTGTTATCTTTCACCACCACACACATCTTACATGGGGTTGGGTCAAAGCGGATACAATTTAAACGAATATGCATATAACACAAGACCGAACACATTGTTCACCCTCGATCCATCACGAGAGTCATTACTATTGAAAGTTCGGACTCACGGCGGATCACCAATAAGCCCTCTATGA | 1887 | 47.75 | MPAWWGRKSSKNKDHHNHPTTFLNFFNSSSSSSSPKTEPKNASDKPRSFDEVSPGIFSRNSPRSSRDLGTSGAASFEFSGFDSDSGDTSVPLPRPTTSGLGIDHGVGNGSGSVSVSSVSSSGSSDDHPSAQEHLQFGGLRGFADTRPEKRPRSPGPGSRGPTSPTSPLNPRFCGMSLESPTGKLDDGMNRCHKLPLPPSSPTSPSSLTSTRAINIGDNNVATQPKWKKGRLLGRGTFGHVYLGFNSVSGQMCAIKEVRVISDDSTSKECLKQLNQEITVLSQLSHPNIVQYYGSEMGDESLSVYLEYVSGGSIHKLLQEYGAFKEPVVRNYTRKILSGLAYLHGRNTVHRDIKGANILVDPNGQVKLVDFGMAKHITNCTSMLSFKGSPYWMAPEVVMNTNGYSLAVDIWSLGCTVLEMATSKPPWSKYEGVAAIFKIGNSKDIPEIPDHLSNDAKSFVQLCLQRDPAARPSAAELLDHPFVQDAVTPRASDVNLSMDAFLFSFDGSQTPPLLDRHPNRKSISICDGDYATNPTISSRTSRSPRGNARLITSLPVSPSSSPLRSYGPAHQSCYLSPPHTSYMGLGQSGYNLNEYAYNTRPNTLFTLDPSRESLLLKVRTHGGSPISPL | 628 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 7515915 | 7520023 | + | CmaCh03G010970.1 | Cma03g01097 | 290668 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma03g01097 | 628 | SMART | serkin_6 | 226 | 482 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma03g01097 | 628 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 3 | 1 | 605 | - | - | |
Cma03g01097 | 628 | CDD | STKc_MEKK1_plant | 225 | 482 | - | - | |
Cma03g01097 | 628 | MobiDBLite | consensus disorder prediction | 19 | 39 | - | - | |
Cma03g01097 | 628 | SUPERFAMILY | Protein kinase-like (PK-like) | 225 | 571 | IPR011009 | - | |
Cma03g01097 | 628 | Gene3D | Transferase(Phosphotransferase) domain 1 | 222 | 499 | - | - | |
Cma03g01097 | 628 | Pfam | Protein kinase domain | 227 | 482 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma03g01097 | 628 | ProSiteProfiles | Protein kinase domain profile. | 226 | 482 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma03g01097 | 628 | MobiDBLite | consensus disorder prediction | 54 | 95 | - | - | |
Cma03g01097 | 628 | ProSitePatterns | Protein kinases ATP-binding region signature. | 232 | 255 | IPR017441 | GO:0005524 | |
Cma03g01097 | 628 | PANTHER | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED | 1 | 605 | - | - | |
Cma03g01097 | 628 | MobiDBLite | consensus disorder prediction | 1 | 172 | - | - | |
Cma03g01097 | 628 | MobiDBLite | consensus disorder prediction | 109 | 130 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma03g01097 | Cma07g00805 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma02g01071 | Cma-Chr2:6378437 | Cma03g01097 | Cma-Chr3:7515915 | 1.49E-128 | dispersed | |
Cma03g01097 | Cma-Chr3:7515915 | Cma18g01256 | Cma-Chr18:9793275 | 1.86E-146 | dispersed | |
Cma03g01097 | Cma-Chr3:7515915 | Cma07g00805 | Cma-Chr7:3686636 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68435 | PF00069 | Pkinase | 9.40E-73 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma03g01097 | K04421 | - | csv:101203907 | 967.607 |