Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01097 ATGCCGGCTTGGTGGGGAAGAAAATCGAGTAAAAACAAGGACCATCACAATCATCCCACTACCTTTCTCAACTTCTTCAACTCTTCTTCTTCTTCTTCTTCCCCCAAAACTGAACCTAAGAACGCCAGCGACAAACCCAGGAGCTTCGATGAGGTCTCTCCTGGGATTTTCTCTCGCAATTCCCCCAGGTCTAGCAGGGATCTGGGCACTTCTGGTGCCGCCTCTTTTGAGTTTTCCGGTTTTGACTCCGATAGTGGAGATACCAGTGTTCCTCTTCCTCGACCTACTACTTCCGGCCTTGGGATTGATCATGGAGTCGGGAATGGATCTGGGTCTGTTTCGGTTTCAAGTGTTAGCTCCTCTGGCTCTTCCGATGATCATCCATCTGCTCAAGAACACCTTCAATTTGGAGGTCTCAGAGGATTTGCTGATACAAGACCAGAGAAAAGGCCAAGAAGTCCAGGTCCAGGATCAAGAGGACCCACCAGTCCTACATCGCCTCTCAACCCGCGGTTCTGTGGCATGAGTTTGGAGTCTCCTACAGGCAAGCTAGATGACGGGATGAATCGATGTCACAAGCTGCCGCTACCTCCAAGTTCTCCCACCAGCCCGTCTTCCTTGACCAGCACGAGAGCTATCAATATCGGCGATAACAATGTTGCTACACAACCGAAGTGGAAGAAAGGAAGGCTTCTAGGAAGGGGAACGTTTGGGCACGTTTACCTTGGATTTAACAGTGTAAGTGGCCAAATGTGTGCAATCAAGGAGGTCAGGGTTATAAGCGATGATTCGACGTCGAAGGAATGTCTCAAGCAATTGAACCAGGAGATTACCGTGCTCAGTCAGCTGTCGCATCCAAACATCGTCCAGTACTATGGTAGTGAAATGGGTGATGAGTCCCTCTCGGTCTATTTAGAATACGTCTCTGGTGGCTCAATTCACAAGTTACTTCAGGAATACGGTGCCTTCAAAGAACCTGTCGTAAGAAACTATACCCGAAAGATCCTTTCCGGGCTTGCTTATCTGCACGGGAGAAACACAGTGCATAGGGACATAAAAGGGGCAAATATCTTAGTCGATCCGAACGGCCAGGTCAAGTTGGTGGACTTTGGCATGGCTAAACATATTACGAATTGTACTTCGATGCTCTCCTTCAAAGGTAGTCCTTATTGGATGGCCCCCGAGGTTGTAATGAATACAAATGGCTACAGTCTTGCTGTAGACATTTGGAGTTTAGGGTGCACTGTTCTTGAAATGGCAACGTCCAAACCGCCTTGGAGCAAATACGAAGGGGTGGCTGCAATTTTCAAAATTGGGAATAGTAAAGACATTCCAGAAATTCCAGACCATCTCTCGAACGATGCTAAAAGTTTCGTGCAATTATGCTTGCAACGGGACCCGGCTGCACGTCCTTCGGCTGCAGAACTACTGGATCACCCTTTTGTTCAAGATGCAGTAACACCAAGAGCGTCCGATGTTAACTTGTCCATGGATGCATTCCTGTTTAGTTTCGATGGAAGCCAGACTCCGCCATTGTTAGATCGGCATCCAAACCGAAAAAGTATAAGCATATGCGATGGAGATTATGCGACGAACCCAACAATCTCTTCGAGAACTTCGAGGAGTCCTAGGGGAAACGCAAGATTGATCACATCCTTGCCTGTCTCTCCTAGTTCAAGTCCATTACGGTCGTATGGCCCCGCACACCAGAGCTGTTATCTTTCACCACCACACACATCTTACATGGGGTTGGGTCAAAGCGGATACAATTTAAACGAATATGCATATAACACAAGACCGAACACATTGTTCACCCTCGATCCATCACGAGAGTCATTACTATTGAAAGTTCGGACTCACGGCGGATCACCAATAAGCCCTCTATGA 1887 47.75 MPAWWGRKSSKNKDHHNHPTTFLNFFNSSSSSSSPKTEPKNASDKPRSFDEVSPGIFSRNSPRSSRDLGTSGAASFEFSGFDSDSGDTSVPLPRPTTSGLGIDHGVGNGSGSVSVSSVSSSGSSDDHPSAQEHLQFGGLRGFADTRPEKRPRSPGPGSRGPTSPTSPLNPRFCGMSLESPTGKLDDGMNRCHKLPLPPSSPTSPSSLTSTRAINIGDNNVATQPKWKKGRLLGRGTFGHVYLGFNSVSGQMCAIKEVRVISDDSTSKECLKQLNQEITVLSQLSHPNIVQYYGSEMGDESLSVYLEYVSGGSIHKLLQEYGAFKEPVVRNYTRKILSGLAYLHGRNTVHRDIKGANILVDPNGQVKLVDFGMAKHITNCTSMLSFKGSPYWMAPEVVMNTNGYSLAVDIWSLGCTVLEMATSKPPWSKYEGVAAIFKIGNSKDIPEIPDHLSNDAKSFVQLCLQRDPAARPSAAELLDHPFVQDAVTPRASDVNLSMDAFLFSFDGSQTPPLLDRHPNRKSISICDGDYATNPTISSRTSRSPRGNARLITSLPVSPSSSPLRSYGPAHQSCYLSPPHTSYMGLGQSGYNLNEYAYNTRPNTLFTLDPSRESLLLKVRTHGGSPISPL 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7515915 7520023 + CmaCh03G010970.1 Cma03g01097 290668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01097 628 SMART serkin_6 226 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g01097 628 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 3 1 605 - -
Cma03g01097 628 CDD STKc_MEKK1_plant 225 482 - -
Cma03g01097 628 MobiDBLite consensus disorder prediction 19 39 - -
Cma03g01097 628 SUPERFAMILY Protein kinase-like (PK-like) 225 571 IPR011009 -
Cma03g01097 628 Gene3D Transferase(Phosphotransferase) domain 1 222 499 - -
Cma03g01097 628 Pfam Protein kinase domain 227 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g01097 628 ProSiteProfiles Protein kinase domain profile. 226 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g01097 628 MobiDBLite consensus disorder prediction 54 95 - -
Cma03g01097 628 ProSitePatterns Protein kinases ATP-binding region signature. 232 255 IPR017441 GO:0005524
Cma03g01097 628 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 605 - -
Cma03g01097 628 MobiDBLite consensus disorder prediction 1 172 - -
Cma03g01097 628 MobiDBLite consensus disorder prediction 109 130 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g01097 Cma07g00805 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01071 Cma-Chr2:6378437 Cma03g01097 Cma-Chr3:7515915 1.49E-128 dispersed
Cma03g01097 Cma-Chr3:7515915 Cma18g01256 Cma-Chr18:9793275 1.86E-146 dispersed
Cma03g01097 Cma-Chr3:7515915 Cma07g00805 Cma-Chr7:3686636 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68435 PF00069 Pkinase 9.40E-73 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01097 K04421 - csv:101203907 967.607