Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01098 ATGGCTTTCTCTGCATCTCTTTCGCACAACTCTTTCTCATGCCTCACTCAGTTCCCGCAAAGTTTTAGAAGAAACCCACTTCGTTTTAATCCCATTCGAGCCCTAAAATCCACTGATCCGGAGAATAAGGCATCGGAGACCAAAACCCAGCAGCCCCCCATGGCTGAACCTTCAACTTCAAGCTCCCCCGCCGCCTCTCCCAAGGTTCTAAAGAAGCCCGTCTATTCGATGAAGAAGGGTCAGATTGTGCGAGTTGATAAAGAGAAGTATCTTAATAGCGTTAATTATCTATCTGTTGGGCATCCACCTTATTACAAGGGCTTGGATTATATTTACGAAGACCGTGGCGAGGTATTAGATATTCGCATTTTCGAGACGGGGGAGTATGCACTTATTGCATGGGTTGGTGTCCCAACTGCACCAGCATGGCTGCCGACTGACATGCTTATAAAGTCGGAGAAACTCAACTACGAAAGACTGTAA 483 46.58 MAFSASLSHNSFSCLTQFPQSFRRNPLRFNPIRALKSTDPENKASETKTQQPPMAEPSTSSSPAASPKVLKKPVYSMKKGQIVRVDKEKYLNSVNYLSVGHPPYYKGLDYIYEDRGEVLDIRIFETGEYALIAWVGVPTAPAWLPTDMLIKSEKLNYERL 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7519453 7521902 - CmaCh03G010980.1 Cma03g01098 290669

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01098 160 MobiDBLite consensus disorder prediction 33 70 - -
Cma03g01098 160 Pfam Cyanobacterial and plant NDH-1 subunit O 77 151 IPR020905 GO:0005886|GO:0016655
Cma03g01098 160 MobiDBLite consensus disorder prediction 44 66 - -
Cma03g01098 160 PANTHER NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT O, CHLOROPLASTIC 1 160 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01098 - - - cmos:111453390 308.916
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1303 Blo04g00954 . . . Bpe15g00413 . . . . . Cma03g01098 . Car03g00989 . Sed14g0233 . Cpe10g00334 Bhi03g01343 Tan03g1302 Cmetu08g1462 . Hepe04g1108 . . Cla01g01511 Cam01g1579 Cec04g1223 Cco04g1292 Clacu01g1605 Cmu01g1492 Cre04g1171 . . . . Lsi01g01156 . . Cme08g01089 . . . Bda14g01044 . . Bma03g01019 . . Cmo03g01083 . . . . . . . . . . . . . . . . . . . . . . Csa06g02775 Chy02g01059 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011041 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma03g01098 Cma_Chr03 FPKM 1.201443 0.570312 5.012617 2.864795 55.534763 49.760841 55.359566 6.085124 7.812045 5.983868