Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01102 ATGGGTGACTTCCATGATGAATTGGATACAAATCAGAAAGTGCAGAAGGCGTTGTTGCAATCTGATGTTCAATCGAAATCAGATAGAAGTCCGGTGACTGTAGCCGATTACGGTTCACAGGCGCTGGTTAGTTTTGTACTGGAAAGGGAACTCCCTTCTGAACCTTTTTCAATGGTAGCTGAGGAGGATTCAGGAGATCTACGAAAAGAGAGTGGCCAGGAAACATTACATCGCATTACCGAACTTGTAAACGAAACACTTTCCAGTGAGGGATCATACAGTGCTTCAACCTTAACGGCAGAAGATGTGCTCAGGGCTATTGACAATGGGAAATCAGAAGGAGGTCCTACTGGTAGACATTGGGTTTTGGATCCCATAGATGGCACCAAGGGATTTCTAAGAGGGGACCAATATGCTACTGCATTGGCATTGCTTGATGATGGGAAAGTAGTTTTGGGTGTCCTAGCCTGTCCAAATCTTCCCTTGGAATCAATTGGTAGCAGTAATCAGCATTCTCCACTTGGAGACGTCGGTTGCCTTTTCTTTTCTACAGTTGGTGCAGGAACATATATGCAGTCGCTTGCTGGTTCTACATTAACAAAGGTGAGTGTCAGTACCACTGAAAATTCTGAAGAAGCATCCTTCTTTGAATCATATGAAGCTGCTCACTCTCTGCATGACCTCACTAGCTCCATTGCACAAAAACTTGGTGTTAAAGCACCACCCGTTAGGATCGACAGTCAAGCAAAATATGGTGCCCTTTCCCGAGGAGATGGAGCCATATACCTTCGTTTTCCTCACAAGGGATACCGTGAAAAGATTTGGGACCATGCTGCCGGATGCATTGTTGTTACAGAAGCTGGTGGAGTGGTTACGGATGCAGCTGGGAATGCATTGGATTTCTCAAGAGGAAGATATCTGGATCTGCACGAGGGTATCATTGTTACGAACCCGAGACTGATGCCATCACTTCTCAAGGCAGTTCAAGAAGCTCTTCAACAGAGAACTTCTTCAACCTTGTGA 1023 45.36 MGDFHDELDTNQKVQKALLQSDVQSKSDRSPVTVADYGSQALVSFVLERELPSEPFSMVAEEDSGDLRKESGQETLHRITELVNETLSSEGSYSASTLTAEDVLRAIDNGKSEGGPTGRHWVLDPIDGTKGFLRGDQYATALALLDDGKVVLGVLACPNLPLESIGSSNQHSPLGDVGCLFFSTVGAGTYMQSLAGSTLTKVSVSTTENSEEASFFESYEAAHSLHDLTSSIAQKLGVKAPPVRIDSQAKYGALSRGDGAIYLRFPHKGYREKIWDHAAGCIVVTEAGGVVTDAAGNALDFSRGRYLDLHEGIIVTNPRLMPSLLKAVQEALQQRTSSTL 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7529964 7533137 + CmaCh03G011020.1 Cma03g01102 290673

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01102 340 ProSitePatterns Inositol monophosphatase family signature 2. 275 289 IPR020550 GO:0046854
Cma03g01102 340 Gene3D - 7 202 - -
Cma03g01102 340 CDD PAP_phosphatase 12 330 - -
Cma03g01102 340 SUPERFAMILY Carbohydrate phosphatase 20 333 - -
Cma03g01102 340 PRINTS Inositol monophosphatase superfamily signature 272 296 IPR000760 GO:0046855
Cma03g01102 340 PRINTS Inositol monophosphatase superfamily signature 30 50 IPR000760 GO:0046855
Cma03g01102 340 PANTHER BNAA09G06680D PROTEIN 12 336 - -
Cma03g01102 340 ProSitePatterns Inositol monophosphatase family signature 1. 121 134 IPR020583 -
Cma03g01102 340 Pfam Inositol monophosphatase family 28 332 IPR000760 GO:0046855
Cma03g01102 340 TIGRFAM bisphos_HAL2: 3'(2'),5'-bisphosphate nucleotidase 12 335 IPR006239 GO:0006790|GO:0008441
Cma03g01102 340 PANTHER PHOSPHATASE 12 336 - -
Cma03g01102 340 Gene3D - 203 334 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01102 K15422 SAL; 3'(2'), 5'-bisphosphate nucleotidase / inositol polyphosphate 1-phosphatase [EC:3.1.3.7 3.1.3.57] - csv:101204881 580.482
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01102 Cma-Chr3:7529964 Cma13g00671 Cma-Chr13:6229758 2.45E-84 dispersed
Cma03g01102 Cma-Chr3:7529964 Cma01g01190 Cma-Chr1:8622200 4.47E-86 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1315 . . . Bda10g00403 . . . Bma15g00782 . . Cma03g01102 . Car03g00991 . Sed10g1074 . Cpe10g00329 Bhi03g01336 Tan03g1298 Cmetu08g0340 . Hepe04g1105 . . Cla01g01508 Cam01g1576 Cec04g1220 Cco04g1288 Clacu01g1601 Cmu01g1489 Cre04g1168 . . Cone6ag1270 . Lsi01g01160 . . Cme08g01092 . . . . Bpe10g00263 . . . . Cmo03g01085 . . . . . . . . . . . . . . . . . . . . . . Csa06g02772 Chy02g01062 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009021 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma03g01102 Cma_Chr03 FPKM 12.189946 11.920048 15.97763 17.4911 22.392025 28.311663 23.909958 16.217945 15.690983 15.941838