Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01104 ATGGAATCTCACAATAGCCGAAGGGAACCATATCTGTTAATGATTCAGATTGCGAAAAGTTCCGGCTCCTCCAGCTTACCGCCTCGCCTGATATCTGGCGCGCAGTGTATCAACTATTCGTTTCCGTTATTGAAGGCTCTCCTAATGGAGTTTCGCATTCTGCAACAATCTTCATCATGTTATGCTGGAAATGTCTTGTGCTCGGTCCAGCCTCGTTTCGGAATTTGTAAGTTTCTTTGTTGGGCTTCCTCGAACACAACATTTTTGCAGAAGAGATGTTCACGAAACGAACCTAGGAGAAAAACACATTATCGTTCGGAAGTTAATAGGGTGGCTGTACTCTGTTCTTCTAGTTCAAGTGACAGTCCATTGAAGCTCTATGATAATGTGAAAATTATTTATTCTGTTGCTGCTGCTACGGGTCATAATCAGGAATCTCATCCAGAATCTCATCTCAGGGTCCCTGCTATAGCGAATGCTCTTGAAAATATGGAACTCACACCTAAGTTTCAAGGCTCAAATGTCGTTGAACTTCAAAATTACAAACCTGCTTCAGTTGATGACATTGTGAGTGTTCATTCAAAATCATACGTGACAGGCCTTGAAAAGGCTATGGATAGGGCTTCTCAAGATGGTCTTATTTTAATTGAAGGCTCTGGACCGACTTATGCCACTGCCACTACATTTAATGAATCACTTGTTGCAGCTGGAGCAGGAATTTCTTTAGTTGATTCAGTGGTCAAAGCGTCAAAAACCTACAAGAATCCGCCAATTGGTTTTGCATTGATAAGGCCTCCAGGACATCATGCAGTACCCAAGGGACCGATGGGATTCTGTGTTTTTGGGAACGTAGCTATTGCAGCTCGTTATGCTCAACGTGTGCATGGATTGAAGCGTGTCTTTATTATAGATTTTGATGCTCACCATGGGAATGGGACAAGCGATGCATTCTACGACGATTCAGATATATTCTTCCTTTCAACTCACCAAGATGGAAGTTACCCTGGAACTGGTAAAATTGATGAAGTGGGTCGTGGAGACGGGGTAGGAACAACTCTGAATATTCCTCTACCAGGGGGCTCTGGTGATTATGCCATGAAAATGGTGTTTGACGAAGTTATTGTACCCTGTGCTCAAAGATTTAAGCCTGATATCATTCTTGTCTCTGCTGGGTATGATGCTCATGTCTTAGATCCCTTAGCCAGTCTGCAATTCACGACCGGAACATACTACATGCTTGCATCCAATATCAAGCAACTGGCAACAGATTTATGCGAAGGTCGATGTGTATTTTTTCTGGAAGGAGGCTACAACCTCGAGTCTCTTTCATATTCAGTGGCTGACTCATTCCGTGCGTTTCTTGGCGAACGGAGCTTGGCGTCGGAGTTTGATAACCCTGCAATCTTGTATGAAGAACCATCAAGGAGGCTTAAGCAAGTGATCCAGAATGTAAAACAAATACATTCACTTTAA 1473 43.04 MESHNSRREPYLLMIQIAKSSGSSSLPPRLISGAQCINYSFPLLKALLMEFRILQQSSSCYAGNVLCSVQPRFGICKFLCWASSNTTFLQKRCSRNEPRRKTHYRSEVNRVAVLCSSSSSDSPLKLYDNVKIIYSVAAATGHNQESHPESHLRVPAIANALENMELTPKFQGSNVVELQNYKPASVDDIVSVHSKSYVTGLEKAMDRASQDGLILIEGSGPTYATATTFNESLVAAGAGISLVDSVVKASKTYKNPPIGFALIRPPGHHAVPKGPMGFCVFGNVAIAARYAQRVHGLKRVFIIDFDAHHGNGTSDAFYDDSDIFFLSTHQDGSYPGTGKIDEVGRGDGVGTTLNIPLPGGSGDYAMKMVFDEVIVPCAQRFKPDIILVSAGYDAHVLDPLASLQFTTGTYYMLASNIKQLATDLCEGRCVFFLEGGYNLESLSYSVADSFRAFLGERSLASEFDNPAILYEEPSRRLKQVIQNVKQIHSL 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7537313 7542950 + CmaCh03G011040.1 Cma03g01104 290675

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01104 490 CDD HDAC_classII 147 454 - -
Cma03g01104 490 Pfam Histone deacetylase domain 147 451 IPR023801 -
Cma03g01104 490 Gene3D Histone deacetylase domain 123 489 IPR037138 -
Cma03g01104 490 PANTHER HISTONE DEACETYLASE 100 489 - -
Cma03g01104 490 PANTHER HISTONE DEACETYLASE 14 100 489 - -
Cma03g01104 490 SUPERFAMILY Arginase/deacetylase 133 485 IPR023696 -
Cma03g01104 490 PRINTS Histone deacetylase superfamily signature 265 288 IPR000286 -
Cma03g01104 490 PRINTS Histone deacetylase superfamily signature 383 393 IPR000286 -
Cma03g01104 490 PRINTS Histone deacetylase superfamily signature 299 314 IPR000286 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01104 - - - cmo:103485288 786.178
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01104 Cma-Chr3:7537313 Cma13g00343 Cma-Chr13:3987526 4.90E-46 dispersed
Cma03g01104 Cma-Chr3:7537313 Cma10g00102 Cma-Chr10:417113 8.28E-18 transposed
Cma03g01104 Cma-Chr3:7537313 Cma11g00075 Cma-Chr11:365637 4.21E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1318 . . . Bda10g00405 . . . Bma15g00779 . . Cma03g01104 . Car03g00993 . Sed11g1186 . Cpe10g00327 Bhi03g01333 Tan03g1296 Cmetu08g1459 . Hepe04g1102 . . Cla01g01506 Cam01g1574 Cec04g1218 Cco04g1286 Clacu01g1599 Cmu01g1487 . . . . . Lsi01g01162 . . Cme08g01094 . Blo06g00188 . . Bpe10g00264 . . . . Cmo03g01087 . . . . . . . . . . . . . . . . . . . . . . Csa06g02770 Chy02g01064 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007674 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma03g01104 Cma_Chr03 FPKM 1.7875 2.182311 9.050619 7.819498 15.511963 13.839404 17.396 5.117639 4.218729 5.513155