Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma03g01117 | ATGGCCGGTGATGCTTCTTCTTCCAACGCCTTCTCCTTTCTTTCCAAAGGCTGGAGGGAGGTTCGCGACTCGGCGGATGCGGATCTTCAGTTGATTAAGGACAGAGCTAACTCTTTCAAGAATTTGGCCACGTCGTTCGACCGAGAAATCGAGAACTTCTTTAATTCCGCCTCTAGTTTCTCTGTTCCTGCAATTGGTTCTGGTTCCTCTCCTCCTGCTGAAATTGAGTTTGTTAAGAAATTGCAGCCGAAGATATCGGAATTTCGCAGGGTGTACTCTTCGCCGGACTTTAGCAAGACTGTACTGGAGAAGTGGAAGCCCAGGACGAGGATTCGGATCGATTTGTCTGCTATTAAGAACGCAATTGTATCCGAGGTGGAAGATGGGGATGGGGTTATCGATGGTGCTGGGATGAGGAAATGGAACAGAGTGAGGTTTAGAGAGTTTTGGGGAGAGAACGAGAGCGAGGAGGTGACCGTTACTAGGGATTGGGAGCCAATCCAAGCGTTGAAAACGAGATTGAGGGAGTTCGAGAAGCGGAGTTCGTCGGCCGAGATGTTTGAGAGTTTTAAGAACGGGGACTTCGTGGAGAAAGTGAAGTCGAGCTTGAGATCAATCTGCAAGGACCCTGAAGACTCAAAGATAGTGGAAAACTTGTGTAACAAACGCAAGAATCAATTACTATGGGGCTCCACTTCAGGAGAAACCTCTATTTTAGGAAATGATAGCGTAAATGATGAATTGGATTCAAGGGTAGCCAGCGTCCTAGAAAGTACTGGACATTGCTATGATGGTGGGTTTTGGACTGATCATGGAAAGCACATACCATCAGACGGGAAAAGGCACGTTGCTATCGTCACGACCGCTAGCCTTCCATGGATGACGGGAACAGCTGTAAACCCGTTGTTTAGGGCTGCATATCTTGCACAATCTGCAAAACAAAGTGTAACGTTATTAGTTCCTTGGCTTTCCATGTCAGATCAGGAGTTAGTTTATCCTAACCATCTCACCTTTAGTTCTCCAGAAGAGCAAGAGACTTACATTCGTAAATGGCTTGAGGAAAGAATTGGGTTTAAGCCTGATTTTAAAATTTCATTCTATCCAGGAAAGTTCTCAAAAGAGAGGCGGAGTATCATACCAGCTGGTGATACTTCTCAGTTTATCCCTTCCAAGGACGCTGACATAGCTATCTTGGAAGAACCAGAACACCTTAATTGGTACCATCATGGCAGGCGTTGGACCGATAAATTTAACCACGTTGTCGGTGTGGTCCATACGAATTACCTGGAATACATCAAGCGGGAGAAAAATGGCGCTCTGCAAGCATTCCTTGTGAAACACATAAACAACTGGGTCATCAGAGCTTACTGTCATAAGGTTCTTCGACTTTCTGCTGCCACCCAAGATCTTCCCAAGTCTGTTATTTGCAATGTGCATGGTGTAAATCCAAAGTTCTTAAAAATTGGAGAAAAAGTCGATGAAGATAGAAAGCTTGGGAATATAACTTTTTCAAAAGGCGCATATTTCTTAGGCAAAATGGTCTGGGCAAAAGGATACAGAGAACTGATAGATTTGCTTGCAAAGCACAAGCATGAGCTTGATGGGTTCAATTTGGATGTGTTTGGAAATGGAGAGGACGCCCACGAGGTTCAGAGCACAGCTAAAAAGTTAGAGCTGAATGTGAACTTTTTGAGAGGAAGGGACCATGCAGATGATTCACTTCACGACTACAAAGTTTTTATAAACCCGAGCGTCAGCGACGTGCTCTGTACCGCTACGGCGGAGGCTCTTGCCATGGGAAAGTTTGTAGTATGTGCAGATCATCCATCCAATGATTTCTTCAGGTCTTTCCCCAACTGTTTGACATTCAAGTCATCCGAAGATTTTGTTGCCAAAGTGAAAGAGGCATTGGAAAACGAACCTCACCCTCTTACTCCTGAGGAAAGATACAATCTCTCATGGGAGGCTGCTACCCAGAGATTCTTGGAGTATTCAGATCTCAACAAAGTCTTGAACAGTGATAAAGAATTGGAATCAAACGGAACCGATCGGAAAGCGATCAGGAAGTCGATCTCAACACCTAGTCTGACTGAAGTCGTTGATGGTGGTCTTGCGTTTGCCCATTATTGTCTTACTGGTAACGAACTCCTCAGACTCTGTACCGGAGCGATTCCGGGGACCCGTGACTACGACAGACAGCACTGTAAAGACCTCCGTCTCCTTCCTCCTCAGTGGAGGCGCCGTGAAAACTCCCAAATAGTCAATGAGGCTTACAACAATGGCAACCGAGAAATCCAATCTTCTCATTTTCCCTCTCCGGCTCCGGCTACTCATCCTCTGCGTCTCACCGCGATGAACAACGGCACGGCGGACAGCGGCGGATTTCTGTCCTCAAACAACATCGGCGGTTTCGGCTACGGAATCGGCGTCTCGTTAGGGCTTTTGATTCTCATCACTACGATCCTCTTAGCTTCCTATTACTGCACCAGAAACGGCTTATCGTCGACGTCCGTGGTCGAGAGAAACACCAATCGCTCGCCGCCGCAGGCGGAGGGAGAAGCCGCCGTCGTCGTCGATGTCGGACTCGATCAGGAGACAATTAAGAGTTATCCGAAATTGCTGTATTCGGAGGCGAAGCTTCTGAAGAATGATTCCTCTGCCTCTTGCTGTTCAATCTGTTTGGCCGATTACAAGAACTCGAATGTTCTTAGGGCTTTGCCTGATTGCGGCCATCTCTTTCACCTCAAGTGCATCGATCCGTGGCTGAGGCTTCATCCGACCTGTCCGGTTTGCCGCACCTCGCCGATTCCGACGCCGTTGTCGACTCCTCTGGCAGAGCAAGTTCCATTGGCCAGTCGGCGGGATTGA | 2868 | 47.35 | MAGDASSSNAFSFLSKGWREVRDSADADLQLIKDRANSFKNLATSFDREIENFFNSASSFSVPAIGSGSSPPAEIEFVKKLQPKISEFRRVYSSPDFSKTVLEKWKPRTRIRIDLSAIKNAIVSEVEDGDGVIDGAGMRKWNRVRFREFWGENESEEVTVTRDWEPIQALKTRLREFEKRSSSAEMFESFKNGDFVEKVKSSLRSICKDPEDSKIVENLCNKRKNQLLWGSTSGETSILGNDSVNDELDSRVASVLESTGHCYDGGFWTDHGKHIPSDGKRHVAIVTTASLPWMTGTAVNPLFRAAYLAQSAKQSVTLLVPWLSMSDQELVYPNHLTFSSPEEQETYIRKWLEERIGFKPDFKISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGRRWTDKFNHVVGVVHTNYLEYIKREKNGALQAFLVKHINNWVIRAYCHKVLRLSAATQDLPKSVICNVHGVNPKFLKIGEKVDEDRKLGNITFSKGAYFLGKMVWAKGYRELIDLLAKHKHELDGFNLDVFGNGEDAHEVQSTAKKLELNVNFLRGRDHADDSLHDYKVFINPSVSDVLCTATAEALAMGKFVVCADHPSNDFFRSFPNCLTFKSSEDFVAKVKEALENEPHPLTPEERYNLSWEAATQRFLEYSDLNKVLNSDKELESNGTDRKAIRKSISTPSLTEVVDGGLAFAHYCLTGNELLRLCTGAIPGTRDYDRQHCKDLRLLPPQWRRRENSQIVNEAYNNGNREIQSSHFPSPAPATHPLRLTAMNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNTNRSPPQAEGEAAVVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLRALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD | 955 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 7611890 | 7617756 | - | CmaCh03G011170.1 | Cma03g01117 | 290688 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma03g01117 | 955 | CDD | Glycosyltransferase_GTB-type | 411 | 614 | - | - | |
Cma03g01117 | 955 | Gene3D | Glycogen Phosphorylase B; | 409 | 480 | - | - | |
Cma03g01117 | 955 | Pfam | Glycosyl transferases group 1 | 507 | 643 | IPR001296 | GO:0016757 | |
Cma03g01117 | 955 | SMART | ring_2 | 890 | 931 | IPR001841 | - | |
Cma03g01117 | 955 | SUPERFAMILY | UDP-Glycosyltransferase/glycogen phosphorylase | 283 | 663 | - | - | |
Cma03g01117 | 955 | PANTHER | DIGALACTOSYLDIACYLGLYCEROL SYNTHASE 1, CHLOROPLASTIC | 213 | 745 | - | - | |
Cma03g01117 | 955 | PANTHER | DIGALACTOSYLDIACYLGLYCEROL SYNTHASE 1, CHLOROPLASTIC | 6 | 214 | - | - | |
Cma03g01117 | 955 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 851 | 936 | IPR013083 | - | |
Cma03g01117 | 955 | ProSiteProfiles | Zinc finger RING-type profile. | 890 | 932 | IPR001841 | - | |
Cma03g01117 | 955 | Gene3D | Glycogen Phosphorylase B; | 481 | 640 | - | - | |
Cma03g01117 | 955 | Pfam | Ring finger domain | 890 | 932 | IPR001841 | - | |
Cma03g01117 | 955 | PANTHER | DIGALACTOSYLDIACYLGLYCEROL SYNTHASE 2, CHLOROPLASTIC | 213 | 745 | IPR044525 | GO:0046481 | |
Cma03g01117 | 955 | PANTHER | DIGALACTOSYLDIACYLGLYCEROL SYNTHASE 2, CHLOROPLASTIC | 6 | 214 | IPR044525 | GO:0046481 | |
Cma03g01117 | 955 | SUPERFAMILY | RING/U-box | 866 | 937 | - | - | |
Cma03g01117 | 955 | CDD | RING-H2_PA-TM-RING | 889 | 932 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma03g01117 | Cma-Chr3:7611890 | Cma06g01097 | Cma-Chr6:7408006 | 0 | dispersed | |
Cma16g01253 | Cma-Chr16:9472729 | Cma03g01117 | Cma-Chr3:7611890 | 1.37E-15 | dispersed | |
Cma07g00824 | Cma-Chr7:3814570 | Cma03g01117 | Cma-Chr3:7611890 | 0 | transposed | |
Cma14g00369 | Cma-Chr14:1676587 | Cma03g01117 | Cma-Chr3:7611890 | 3.18E-50 | wgd | |
Cma03g01117 | Cma-Chr3:7611890 | Cma07g00821 | Cma-Chr7:3804669 | 1.24E-52 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma03g01117 | K09480 | - | csv:101218383 | 1422.91 |