Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01117 ATGGCCGGTGATGCTTCTTCTTCCAACGCCTTCTCCTTTCTTTCCAAAGGCTGGAGGGAGGTTCGCGACTCGGCGGATGCGGATCTTCAGTTGATTAAGGACAGAGCTAACTCTTTCAAGAATTTGGCCACGTCGTTCGACCGAGAAATCGAGAACTTCTTTAATTCCGCCTCTAGTTTCTCTGTTCCTGCAATTGGTTCTGGTTCCTCTCCTCCTGCTGAAATTGAGTTTGTTAAGAAATTGCAGCCGAAGATATCGGAATTTCGCAGGGTGTACTCTTCGCCGGACTTTAGCAAGACTGTACTGGAGAAGTGGAAGCCCAGGACGAGGATTCGGATCGATTTGTCTGCTATTAAGAACGCAATTGTATCCGAGGTGGAAGATGGGGATGGGGTTATCGATGGTGCTGGGATGAGGAAATGGAACAGAGTGAGGTTTAGAGAGTTTTGGGGAGAGAACGAGAGCGAGGAGGTGACCGTTACTAGGGATTGGGAGCCAATCCAAGCGTTGAAAACGAGATTGAGGGAGTTCGAGAAGCGGAGTTCGTCGGCCGAGATGTTTGAGAGTTTTAAGAACGGGGACTTCGTGGAGAAAGTGAAGTCGAGCTTGAGATCAATCTGCAAGGACCCTGAAGACTCAAAGATAGTGGAAAACTTGTGTAACAAACGCAAGAATCAATTACTATGGGGCTCCACTTCAGGAGAAACCTCTATTTTAGGAAATGATAGCGTAAATGATGAATTGGATTCAAGGGTAGCCAGCGTCCTAGAAAGTACTGGACATTGCTATGATGGTGGGTTTTGGACTGATCATGGAAAGCACATACCATCAGACGGGAAAAGGCACGTTGCTATCGTCACGACCGCTAGCCTTCCATGGATGACGGGAACAGCTGTAAACCCGTTGTTTAGGGCTGCATATCTTGCACAATCTGCAAAACAAAGTGTAACGTTATTAGTTCCTTGGCTTTCCATGTCAGATCAGGAGTTAGTTTATCCTAACCATCTCACCTTTAGTTCTCCAGAAGAGCAAGAGACTTACATTCGTAAATGGCTTGAGGAAAGAATTGGGTTTAAGCCTGATTTTAAAATTTCATTCTATCCAGGAAAGTTCTCAAAAGAGAGGCGGAGTATCATACCAGCTGGTGATACTTCTCAGTTTATCCCTTCCAAGGACGCTGACATAGCTATCTTGGAAGAACCAGAACACCTTAATTGGTACCATCATGGCAGGCGTTGGACCGATAAATTTAACCACGTTGTCGGTGTGGTCCATACGAATTACCTGGAATACATCAAGCGGGAGAAAAATGGCGCTCTGCAAGCATTCCTTGTGAAACACATAAACAACTGGGTCATCAGAGCTTACTGTCATAAGGTTCTTCGACTTTCTGCTGCCACCCAAGATCTTCCCAAGTCTGTTATTTGCAATGTGCATGGTGTAAATCCAAAGTTCTTAAAAATTGGAGAAAAAGTCGATGAAGATAGAAAGCTTGGGAATATAACTTTTTCAAAAGGCGCATATTTCTTAGGCAAAATGGTCTGGGCAAAAGGATACAGAGAACTGATAGATTTGCTTGCAAAGCACAAGCATGAGCTTGATGGGTTCAATTTGGATGTGTTTGGAAATGGAGAGGACGCCCACGAGGTTCAGAGCACAGCTAAAAAGTTAGAGCTGAATGTGAACTTTTTGAGAGGAAGGGACCATGCAGATGATTCACTTCACGACTACAAAGTTTTTATAAACCCGAGCGTCAGCGACGTGCTCTGTACCGCTACGGCGGAGGCTCTTGCCATGGGAAAGTTTGTAGTATGTGCAGATCATCCATCCAATGATTTCTTCAGGTCTTTCCCCAACTGTTTGACATTCAAGTCATCCGAAGATTTTGTTGCCAAAGTGAAAGAGGCATTGGAAAACGAACCTCACCCTCTTACTCCTGAGGAAAGATACAATCTCTCATGGGAGGCTGCTACCCAGAGATTCTTGGAGTATTCAGATCTCAACAAAGTCTTGAACAGTGATAAAGAATTGGAATCAAACGGAACCGATCGGAAAGCGATCAGGAAGTCGATCTCAACACCTAGTCTGACTGAAGTCGTTGATGGTGGTCTTGCGTTTGCCCATTATTGTCTTACTGGTAACGAACTCCTCAGACTCTGTACCGGAGCGATTCCGGGGACCCGTGACTACGACAGACAGCACTGTAAAGACCTCCGTCTCCTTCCTCCTCAGTGGAGGCGCCGTGAAAACTCCCAAATAGTCAATGAGGCTTACAACAATGGCAACCGAGAAATCCAATCTTCTCATTTTCCCTCTCCGGCTCCGGCTACTCATCCTCTGCGTCTCACCGCGATGAACAACGGCACGGCGGACAGCGGCGGATTTCTGTCCTCAAACAACATCGGCGGTTTCGGCTACGGAATCGGCGTCTCGTTAGGGCTTTTGATTCTCATCACTACGATCCTCTTAGCTTCCTATTACTGCACCAGAAACGGCTTATCGTCGACGTCCGTGGTCGAGAGAAACACCAATCGCTCGCCGCCGCAGGCGGAGGGAGAAGCCGCCGTCGTCGTCGATGTCGGACTCGATCAGGAGACAATTAAGAGTTATCCGAAATTGCTGTATTCGGAGGCGAAGCTTCTGAAGAATGATTCCTCTGCCTCTTGCTGTTCAATCTGTTTGGCCGATTACAAGAACTCGAATGTTCTTAGGGCTTTGCCTGATTGCGGCCATCTCTTTCACCTCAAGTGCATCGATCCGTGGCTGAGGCTTCATCCGACCTGTCCGGTTTGCCGCACCTCGCCGATTCCGACGCCGTTGTCGACTCCTCTGGCAGAGCAAGTTCCATTGGCCAGTCGGCGGGATTGA 2868 47.35 MAGDASSSNAFSFLSKGWREVRDSADADLQLIKDRANSFKNLATSFDREIENFFNSASSFSVPAIGSGSSPPAEIEFVKKLQPKISEFRRVYSSPDFSKTVLEKWKPRTRIRIDLSAIKNAIVSEVEDGDGVIDGAGMRKWNRVRFREFWGENESEEVTVTRDWEPIQALKTRLREFEKRSSSAEMFESFKNGDFVEKVKSSLRSICKDPEDSKIVENLCNKRKNQLLWGSTSGETSILGNDSVNDELDSRVASVLESTGHCYDGGFWTDHGKHIPSDGKRHVAIVTTASLPWMTGTAVNPLFRAAYLAQSAKQSVTLLVPWLSMSDQELVYPNHLTFSSPEEQETYIRKWLEERIGFKPDFKISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGRRWTDKFNHVVGVVHTNYLEYIKREKNGALQAFLVKHINNWVIRAYCHKVLRLSAATQDLPKSVICNVHGVNPKFLKIGEKVDEDRKLGNITFSKGAYFLGKMVWAKGYRELIDLLAKHKHELDGFNLDVFGNGEDAHEVQSTAKKLELNVNFLRGRDHADDSLHDYKVFINPSVSDVLCTATAEALAMGKFVVCADHPSNDFFRSFPNCLTFKSSEDFVAKVKEALENEPHPLTPEERYNLSWEAATQRFLEYSDLNKVLNSDKELESNGTDRKAIRKSISTPSLTEVVDGGLAFAHYCLTGNELLRLCTGAIPGTRDYDRQHCKDLRLLPPQWRRRENSQIVNEAYNNGNREIQSSHFPSPAPATHPLRLTAMNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNTNRSPPQAEGEAAVVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLRALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 955
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7611890 7617756 - CmaCh03G011170.1 Cma03g01117 290688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01117 955 CDD Glycosyltransferase_GTB-type 411 614 - -
Cma03g01117 955 Gene3D Glycogen Phosphorylase B; 409 480 - -
Cma03g01117 955 Pfam Glycosyl transferases group 1 507 643 IPR001296 GO:0016757
Cma03g01117 955 SMART ring_2 890 931 IPR001841 -
Cma03g01117 955 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 283 663 - -
Cma03g01117 955 PANTHER DIGALACTOSYLDIACYLGLYCEROL SYNTHASE 1, CHLOROPLASTIC 213 745 - -
Cma03g01117 955 PANTHER DIGALACTOSYLDIACYLGLYCEROL SYNTHASE 1, CHLOROPLASTIC 6 214 - -
Cma03g01117 955 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 851 936 IPR013083 -
Cma03g01117 955 ProSiteProfiles Zinc finger RING-type profile. 890 932 IPR001841 -
Cma03g01117 955 Gene3D Glycogen Phosphorylase B; 481 640 - -
Cma03g01117 955 Pfam Ring finger domain 890 932 IPR001841 -
Cma03g01117 955 PANTHER DIGALACTOSYLDIACYLGLYCEROL SYNTHASE 2, CHLOROPLASTIC 213 745 IPR044525 GO:0046481
Cma03g01117 955 PANTHER DIGALACTOSYLDIACYLGLYCEROL SYNTHASE 2, CHLOROPLASTIC 6 214 IPR044525 GO:0046481
Cma03g01117 955 SUPERFAMILY RING/U-box 866 937 - -
Cma03g01117 955 CDD RING-H2_PA-TM-RING 889 932 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01117 Cma-Chr3:7611890 Cma06g01097 Cma-Chr6:7408006 0 dispersed
Cma16g01253 Cma-Chr16:9472729 Cma03g01117 Cma-Chr3:7611890 1.37E-15 dispersed
Cma07g00824 Cma-Chr7:3814570 Cma03g01117 Cma-Chr3:7611890 0 transposed
Cma14g00369 Cma-Chr14:1676587 Cma03g01117 Cma-Chr3:7611890 3.18E-50 wgd
Cma03g01117 Cma-Chr3:7611890 Cma07g00821 Cma-Chr7:3804669 1.24E-52 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01117 K09480 - csv:101218383 1422.91