Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01126 ATGCGTGGCGGCTCTCGATCTCCGTACAGGTCGGAGCCACTGCCCCTCTCACAAACTGCTCAGATCCTGCCGCCTCTTAAGCATCAGCAAGCTTTCGAGTCGAATAAGCCGGTGCTTGCTTTTTCCAATTCTTTTGATCAAGAACCTGATTCCATCGCTGTTAAACCTCTCAAACCAAAGCAGACAGATGTTATGTATACCAACGTGGTTGAATCAAATGACTGCATTCATGATCAGGGATTTTCTAAAGATTCTCTAAGTTCTGTTCAGACGCCCGTATCTGCAAAAGGAGGAAGGATGTACAATAAGTCAAAAACTTCAAGGAGAATGACATCTGGGACTCAAACACCTATCTCAGACACTACAGCCATTTATTCTCCTCTTACTCCAGCTGGAAACTGTCGATATGACAGTTCTTTAGGTCTTCTGACAAAAAAATTCATCAATTTAATTAAGCAAGCAAGGGATGGCATTCTTGACTTAAACAAAGCTGCAGAAACTTTGCAGGTGCAGAAAAGGAGAATATATGACATAACAAATGTTTTGGAAGGCATAGGTCTCATAGAAAAGAAGCTGAAAAACATAATATATTGGAAGGGATTCAATACACAAGTTCCAGGAAATGTGGATAGTGATACTTCTATGTTGCAGGTGGATGTTGAAAACCTTTCTTTTGAAGAGCGTAGATTAAATGATAAGATAAGAACATTGCAGGAAAGACTGAGGAATCTGAGTGAAGACGAAAATCTCCAGAAATGGCTCTTTGTGACAGAAGAAGACATTAAAAGCTTGCCTTGCTTTCAGAATGAAACGCTGATAGCAATTAAAGCTCCTCATGGAACCACATTGGAAGTTCCTGATCCTGATGAAGCTGTTGATTATCCACAGAGAAGATATAGGATAGTTCTTAGGAGTACGATGGGTCCTATCGATGTATATCTTGTCAGTCAATTTGAGGAAAAGTTTGAGGAGGTGAATGTGGTCAAGCCACCCAGGAACTTCCTACATGCTTCCAGTTCAGGATCAAACGAACATCTAGCAACAGAAGCCATTGGGGAGAGTAGTAGAGACGAAATAGAGCCTCAAGCTCACCTGTCCCAATACAGCAGTAGCAGTGATGTGAATGGTTCAAATGAGTTTCCTGGGGGAATGATGAAGATTATTCCTTCAGAATTTGATAATGATGCAGATTACTGGCTGTTATCAGATGCTGAAGTTAGCATTACAGATATGTGGAGAACAGATTCAGATATTGCATGGGATGAATCGCATATGGTTTCTCAGGACTTTTTGATATCCTCGCCAAGACCAGGAAGCCCACATTCGGAGACAGTCGAAGCACCATCTGATGTTAACTTAAGACAGAGCTCAACTGTTCAGTGTAATTTCTATAACCCAAGTAATAATGTACTGGGAAGATTTTCCAAGCATGGTATAGAATATAAATTGCGAGGACTAGTCATACGCGGTGTGCAGAGGAAATAG 1485 41.14 MRGGSRSPYRSEPLPLSQTAQILPPLKHQQAFESNKPVLAFSNSFDQEPDSIAVKPLKPKQTDVMYTNVVESNDCIHDQGFSKDSLSSVQTPVSAKGGRMYNKSKTSRRMTSGTQTPISDTTAIYSPLTPAGNCRYDSSLGLLTKKFINLIKQARDGILDLNKAAETLQVQKRRIYDITNVLEGIGLIEKKLKNIIYWKGFNTQVPGNVDSDTSMLQVDVENLSFEERRLNDKIRTLQERLRNLSEDENLQKWLFVTEEDIKSLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEVNVVKPPRNFLHASSSGSNEHLATEAIGESSRDEIEPQAHLSQYSSSSDVNGSNEFPGGMMKIIPSEFDNDADYWLLSDAEVSITDMWRTDSDIAWDESHMVSQDFLISSPRPGSPHSETVEAPSDVNLRQSSTVQCNFYNPSNNVLGRFSKHGIEYKLRGLVIRGVQRK 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7646164 7652049 + CmaCh03G011260.1 Cma03g01126 290697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01126 494 MobiDBLite consensus disorder prediction 336 376 - -
Cma03g01126 494 Gene3D - 129 203 IPR036388 -
Cma03g01126 494 Gene3D - 207 317 - -
Cma03g01126 494 PANTHER TRANSCRIPTION FACTOR E2F 27 444 IPR015633 GO:0000978|GO:0006357
Cma03g01126 494 Pfam E2F transcription factor CC-MB domain 216 316 IPR032198 GO:0046983
Cma03g01126 494 SUPERFAMILY E2F-DP heterodimerization region 214 317 IPR037241 -
Cma03g01126 494 CDD E2F_DD 216 317 IPR032198 GO:0046983
Cma03g01126 494 Pfam E2F/DP family winged-helix DNA-binding domain 137 200 IPR003316 GO:0005667|GO:0006355
Cma03g01126 494 PANTHER TRANSCRIPTION FACTOR E2FB 27 444 - -
Cma03g01126 494 MobiDBLite consensus disorder prediction 361 376 - -
Cma03g01126 494 SMART E2F_TDP_2 135 200 IPR003316 GO:0005667|GO:0006355
Cma03g01126 494 MobiDBLite consensus disorder prediction 86 115 - -
Cma03g01126 494 SUPERFAMILY Winged helix DNA-binding domain 135 198 IPR036390 -
Cma03g01126 494 Coils Coil 220 247 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01126 Cma-Chr3:7646164 Cma20g00153 Cma-Chr20:751925 5.34E-164 dispersed
Cma02g01309 Cma-Chr2:7700431 Cma03g01126 Cma-Chr3:7646164 1.16E-72 wgd
Cma03g01126 Cma-Chr3:7646164 Cma07g00828 Cma-Chr7:3838530 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34689 PF16421 E2F_CC-MB 2.40E-32 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01126 K06620 - csv:101212480 689.878