Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma03g01126 | ATGCGTGGCGGCTCTCGATCTCCGTACAGGTCGGAGCCACTGCCCCTCTCACAAACTGCTCAGATCCTGCCGCCTCTTAAGCATCAGCAAGCTTTCGAGTCGAATAAGCCGGTGCTTGCTTTTTCCAATTCTTTTGATCAAGAACCTGATTCCATCGCTGTTAAACCTCTCAAACCAAAGCAGACAGATGTTATGTATACCAACGTGGTTGAATCAAATGACTGCATTCATGATCAGGGATTTTCTAAAGATTCTCTAAGTTCTGTTCAGACGCCCGTATCTGCAAAAGGAGGAAGGATGTACAATAAGTCAAAAACTTCAAGGAGAATGACATCTGGGACTCAAACACCTATCTCAGACACTACAGCCATTTATTCTCCTCTTACTCCAGCTGGAAACTGTCGATATGACAGTTCTTTAGGTCTTCTGACAAAAAAATTCATCAATTTAATTAAGCAAGCAAGGGATGGCATTCTTGACTTAAACAAAGCTGCAGAAACTTTGCAGGTGCAGAAAAGGAGAATATATGACATAACAAATGTTTTGGAAGGCATAGGTCTCATAGAAAAGAAGCTGAAAAACATAATATATTGGAAGGGATTCAATACACAAGTTCCAGGAAATGTGGATAGTGATACTTCTATGTTGCAGGTGGATGTTGAAAACCTTTCTTTTGAAGAGCGTAGATTAAATGATAAGATAAGAACATTGCAGGAAAGACTGAGGAATCTGAGTGAAGACGAAAATCTCCAGAAATGGCTCTTTGTGACAGAAGAAGACATTAAAAGCTTGCCTTGCTTTCAGAATGAAACGCTGATAGCAATTAAAGCTCCTCATGGAACCACATTGGAAGTTCCTGATCCTGATGAAGCTGTTGATTATCCACAGAGAAGATATAGGATAGTTCTTAGGAGTACGATGGGTCCTATCGATGTATATCTTGTCAGTCAATTTGAGGAAAAGTTTGAGGAGGTGAATGTGGTCAAGCCACCCAGGAACTTCCTACATGCTTCCAGTTCAGGATCAAACGAACATCTAGCAACAGAAGCCATTGGGGAGAGTAGTAGAGACGAAATAGAGCCTCAAGCTCACCTGTCCCAATACAGCAGTAGCAGTGATGTGAATGGTTCAAATGAGTTTCCTGGGGGAATGATGAAGATTATTCCTTCAGAATTTGATAATGATGCAGATTACTGGCTGTTATCAGATGCTGAAGTTAGCATTACAGATATGTGGAGAACAGATTCAGATATTGCATGGGATGAATCGCATATGGTTTCTCAGGACTTTTTGATATCCTCGCCAAGACCAGGAAGCCCACATTCGGAGACAGTCGAAGCACCATCTGATGTTAACTTAAGACAGAGCTCAACTGTTCAGTGTAATTTCTATAACCCAAGTAATAATGTACTGGGAAGATTTTCCAAGCATGGTATAGAATATAAATTGCGAGGACTAGTCATACGCGGTGTGCAGAGGAAATAG | 1485 | 41.14 | MRGGSRSPYRSEPLPLSQTAQILPPLKHQQAFESNKPVLAFSNSFDQEPDSIAVKPLKPKQTDVMYTNVVESNDCIHDQGFSKDSLSSVQTPVSAKGGRMYNKSKTSRRMTSGTQTPISDTTAIYSPLTPAGNCRYDSSLGLLTKKFINLIKQARDGILDLNKAAETLQVQKRRIYDITNVLEGIGLIEKKLKNIIYWKGFNTQVPGNVDSDTSMLQVDVENLSFEERRLNDKIRTLQERLRNLSEDENLQKWLFVTEEDIKSLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEVNVVKPPRNFLHASSSGSNEHLATEAIGESSRDEIEPQAHLSQYSSSSDVNGSNEFPGGMMKIIPSEFDNDADYWLLSDAEVSITDMWRTDSDIAWDESHMVSQDFLISSPRPGSPHSETVEAPSDVNLRQSSTVQCNFYNPSNNVLGRFSKHGIEYKLRGLVIRGVQRK | 494 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 7646164 | 7652049 | + | CmaCh03G011260.1 | Cma03g01126 | 290697 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma03g01126 | 494 | MobiDBLite | consensus disorder prediction | 336 | 376 | - | - | |
Cma03g01126 | 494 | Gene3D | - | 129 | 203 | IPR036388 | - | |
Cma03g01126 | 494 | Gene3D | - | 207 | 317 | - | - | |
Cma03g01126 | 494 | PANTHER | TRANSCRIPTION FACTOR E2F | 27 | 444 | IPR015633 | GO:0000978|GO:0006357 | |
Cma03g01126 | 494 | Pfam | E2F transcription factor CC-MB domain | 216 | 316 | IPR032198 | GO:0046983 | |
Cma03g01126 | 494 | SUPERFAMILY | E2F-DP heterodimerization region | 214 | 317 | IPR037241 | - | |
Cma03g01126 | 494 | CDD | E2F_DD | 216 | 317 | IPR032198 | GO:0046983 | |
Cma03g01126 | 494 | Pfam | E2F/DP family winged-helix DNA-binding domain | 137 | 200 | IPR003316 | GO:0005667|GO:0006355 | |
Cma03g01126 | 494 | PANTHER | TRANSCRIPTION FACTOR E2FB | 27 | 444 | - | - | |
Cma03g01126 | 494 | MobiDBLite | consensus disorder prediction | 361 | 376 | - | - | |
Cma03g01126 | 494 | SMART | E2F_TDP_2 | 135 | 200 | IPR003316 | GO:0005667|GO:0006355 | |
Cma03g01126 | 494 | MobiDBLite | consensus disorder prediction | 86 | 115 | - | - | |
Cma03g01126 | 494 | SUPERFAMILY | Winged helix DNA-binding domain | 135 | 198 | IPR036390 | - | |
Cma03g01126 | 494 | Coils | Coil | 220 | 247 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma03g01126 | Cma-Chr3:7646164 | Cma20g00153 | Cma-Chr20:751925 | 5.34E-164 | dispersed | |
Cma02g01309 | Cma-Chr2:7700431 | Cma03g01126 | Cma-Chr3:7646164 | 1.16E-72 | wgd | |
Cma03g01126 | Cma-Chr3:7646164 | Cma07g00828 | Cma-Chr7:3838530 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34689 | PF16421 | E2F_CC-MB | 2.40E-32 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma03g01126 | K06620 | - | csv:101212480 | 689.878 |