Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01126 ATGCGTGGCGGCTCTCGATCTCCGTACAGGTCGGAGCCACTGCCCCTCTCACAAACTGCTCAGATCCTGCCGCCTCTTAAGCATCAGCAAGCTTTCGAGTCGAATAAGCCGGTGCTTGCTTTTTCCAATTCTTTTGATCAAGAACCTGATTCCATCGCTGTTAAACCTCTCAAACCAAAGCAGACAGATGTTATGTATACCAACGTGGTTGAATCAAATGACTGCATTCATGATCAGGGATTTTCTAAAGATTCTCTAAGTTCTGTTCAGACGCCCGTATCTGCAAAAGGAGGAAGGATGTACAATAAGTCAAAAACTTCAAGGAGAATGACATCTGGGACTCAAACACCTATCTCAGACACTACAGCCATTTATTCTCCTCTTACTCCAGCTGGAAACTGTCGATATGACAGTTCTTTAGGTCTTCTGACAAAAAAATTCATCAATTTAATTAAGCAAGCAAGGGATGGCATTCTTGACTTAAACAAAGCTGCAGAAACTTTGCAGGTGCAGAAAAGGAGAATATATGACATAACAAATGTTTTGGAAGGCATAGGTCTCATAGAAAAGAAGCTGAAAAACATAATATATTGGAAGGGATTCAATACACAAGTTCCAGGAAATGTGGATAGTGATACTTCTATGTTGCAGGTGGATGTTGAAAACCTTTCTTTTGAAGAGCGTAGATTAAATGATAAGATAAGAACATTGCAGGAAAGACTGAGGAATCTGAGTGAAGACGAAAATCTCCAGAAATGGCTCTTTGTGACAGAAGAAGACATTAAAAGCTTGCCTTGCTTTCAGAATGAAACGCTGATAGCAATTAAAGCTCCTCATGGAACCACATTGGAAGTTCCTGATCCTGATGAAGCTGTTGATTATCCACAGAGAAGATATAGGATAGTTCTTAGGAGTACGATGGGTCCTATCGATGTATATCTTGTCAGTCAATTTGAGGAAAAGTTTGAGGAGGTGAATGTGGTCAAGCCACCCAGGAACTTCCTACATGCTTCCAGTTCAGGATCAAACGAACATCTAGCAACAGAAGCCATTGGGGAGAGTAGTAGAGACGAAATAGAGCCTCAAGCTCACCTGTCCCAATACAGCAGTAGCAGTGATGTGAATGGTTCAAATGAGTTTCCTGGGGGAATGATGAAGATTATTCCTTCAGAATTTGATAATGATGCAGATTACTGGCTGTTATCAGATGCTGAAGTTAGCATTACAGATATGTGGAGAACAGATTCAGATATTGCATGGGATGAATCGCATATGGTTTCTCAGGACTTTTTGATATCCTCGCCAAGACCAGGAAGCCCACATTCGGAGACAGTCGAAGCACCATCTGATGTTAACTTAAGACAGAGCTCAACTGTTCAGTGTAATTTCTATAACCCAAGTAATAATGTACTGGGAAGATTTTCCAAGCATGGTATAGAATATAAATTGCGAGGACTAGTCATACGCGGTGTGCAGAGGAAATAG 1485 41.14 MRGGSRSPYRSEPLPLSQTAQILPPLKHQQAFESNKPVLAFSNSFDQEPDSIAVKPLKPKQTDVMYTNVVESNDCIHDQGFSKDSLSSVQTPVSAKGGRMYNKSKTSRRMTSGTQTPISDTTAIYSPLTPAGNCRYDSSLGLLTKKFINLIKQARDGILDLNKAAETLQVQKRRIYDITNVLEGIGLIEKKLKNIIYWKGFNTQVPGNVDSDTSMLQVDVENLSFEERRLNDKIRTLQERLRNLSEDENLQKWLFVTEEDIKSLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEVNVVKPPRNFLHASSSGSNEHLATEAIGESSRDEIEPQAHLSQYSSSSDVNGSNEFPGGMMKIIPSEFDNDADYWLLSDAEVSITDMWRTDSDIAWDESHMVSQDFLISSPRPGSPHSETVEAPSDVNLRQSSTVQCNFYNPSNNVLGRFSKHGIEYKLRGLVIRGVQRK 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7646164 7652049 + CmaCh03G011260.1 Cma03g01126 290697

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01126 494 MobiDBLite consensus disorder prediction 336 376 - -
Cma03g01126 494 Gene3D - 129 203 IPR036388 -
Cma03g01126 494 Gene3D - 207 317 - -
Cma03g01126 494 PANTHER TRANSCRIPTION FACTOR E2F 27 444 IPR015633 GO:0000978|GO:0006357
Cma03g01126 494 Pfam E2F transcription factor CC-MB domain 216 316 IPR032198 GO:0046983
Cma03g01126 494 SUPERFAMILY E2F-DP heterodimerization region 214 317 IPR037241 -
Cma03g01126 494 CDD E2F_DD 216 317 IPR032198 GO:0046983
Cma03g01126 494 Pfam E2F/DP family winged-helix DNA-binding domain 137 200 IPR003316 GO:0005667|GO:0006355
Cma03g01126 494 PANTHER TRANSCRIPTION FACTOR E2FB 27 444 - -
Cma03g01126 494 MobiDBLite consensus disorder prediction 361 376 - -
Cma03g01126 494 SMART E2F_TDP_2 135 200 IPR003316 GO:0005667|GO:0006355
Cma03g01126 494 MobiDBLite consensus disorder prediction 86 115 - -
Cma03g01126 494 SUPERFAMILY Winged helix DNA-binding domain 135 198 IPR036390 -
Cma03g01126 494 Coils Coil 220 247 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01126 K06620 E2F3; transcription factor E2F3 - csv:101212480 689.878
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01126 Cma-Chr3:7646164 Cma20g00153 Cma-Chr20:751925 5.34E-164 dispersed
Cma02g01309 Cma-Chr2:7700431 Cma03g01126 Cma-Chr3:7646164 1.16E-72 wgd
Cma03g01126 Cma-Chr3:7646164 Cma07g00828 Cma-Chr7:3838530 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma18g00144 CCT,CST 17 392 E2F-DP Transcription Factor Family AT3G48160 55.1 7.9e-104 374.8
Cma16g00244 . 81 284 E2F-DP Transcription Factor Family AT5G02470 54.6 9.6e-59 224.6
Cma04g00385 . 541 751 E2F-DP Transcription Factor Family AT5G02470 52.8 1.8e-57 220.3
Cma20g00153 CST 21 441 E2F-DP Transcription Factor Family AT2G36010 55.8 5.9e-122 435.3
Cma03g01126 . 11 421 E2F-DP Transcription Factor Family AT2G36010 53.1 1.0e-110 397.9
Cma02g01309 CST 21 257 E2F-DP Transcription Factor Family AT2G36010 54.5 2.9e-60 230.3
Cma20g00153 CST 10 463 E2F-DP Transcription Factor Family AT5G22220 56.0 8.8e-115 411.4
Cma03g01126 . 50 446 E2F-DP Transcription Factor Family AT5G22220 50.8 2.6e-90 330.1
Cma02g01309 CST 24 257 E2F-DP Transcription Factor Family AT5G22220 60.6 3.3e-61 233.4
Cma05g00301 CST 155 410 E2F-DP Transcription Factor Family AT1G47870 53.7 6.4e-66 248.8
Cma12g00412 CST 153 408 E2F-DP Transcription Factor Family AT1G47870 53.1 3.2e-65 246.5
Cma20g00153 CST 139 415 E2F-DP Transcription Factor Family AT1G47870 51.3 5.1e-63 239.2
Cma16g00244 . 81 284 E2F-DP Transcription Factor Family AT5G02470 54.6 9.6e-59 224.6
Cma04g00385 . 541 751 E2F-DP Transcription Factor Family AT5G02470 52.8 1.8e-57 220.3
Cma20g00153 CST 10 463 E2F-DP Transcription Factor Family AT5G22220 56.0 8.8e-115 411.4
Cma03g01126 . 50 446 E2F-DP Transcription Factor Family AT5G22220 50.8 2.6e-90 330.1
Cma02g01309 CST 24 257 E2F-DP Transcription Factor Family AT5G22220 60.6 3.3e-61 233.4
Cma20g00153 CST 21 441 E2F-DP Transcription Factor Family AT2G36010 55.8 5.9e-122 435.3
Cma03g01126 . 11 421 E2F-DP Transcription Factor Family AT2G36010 53.1 1.0e-110 397.9
Cma02g01309 CST 21 257 E2F-DP Transcription Factor Family AT2G36010 54.5 2.9e-60 230.3
Cma05g00301 CST 155 410 E2F-DP Transcription Factor Family AT1G47870 53.7 6.4e-66 248.8
Cma12g00412 CST 153 408 E2F-DP Transcription Factor Family AT1G47870 53.1 3.2e-65 246.5
Cma20g00153 CST 139 415 E2F-DP Transcription Factor Family AT1G47870 51.3 5.1e-63 239.2
Cma18g00144 CCT,CST 17 392 E2F-DP Transcription Factor Family AT3G48160 55.1 7.9e-104 374.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005036 1 2 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 3 0 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34689 PF16421 E2F_CC-MB 2.40E-32 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma03g01126 Cma_Chr03 FPKM 2.624224 3.094426 1.280147 1.371464 10.092331 7.69512 11.066614 0.49983 0.0 0.0