Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01162 ATGGCGGAAGAGCACCGATGCCAAGCACCTGAAGGCCACCGTCTCTGCGCCAATAATTGCGGCTTCTTCGGTAGCCCAGCTACCATGGATCTCTGCTCCAAATGTTACAGAGACATCCGCCTTAAAGAACAAGAACAAGCCTCCACCAAATCCACCATCGAAGCCGCTCTCTCTGCCTCGTCGTCTCCTTCTCCCTCCTCTTCCTCAATCGATCCTCCTCCCGTTCCTCCTGTTGTCGCCGCGTCCTCGCCGGACGCCACCACAGAACTGACCATCCCCGCTCTCGCAGCGGTCGGATCTGAGGCCACGAACCAACCGAACCCGAACCCGACTCCGAACCCGAACCGTTGTTCATCGTGCCGTAAGAAGGTGGGTTTGACCGGGTTCAGATGCAGATGCGGAACCACCTTCTGTGGGGCTCATAGGTACCCGGAGAAACACGGGTGCACCTTCGATTTCAAGTCAATCGGAAGGGAGGAGATCGCTCGAGCGAACCCCGTCGTCAAAGCCGATAAACTGGAGAGGATTTGA 531 57.25 MAEEHRCQAPEGHRLCANNCGFFGSPATMDLCSKCYRDIRLKEQEQASTKSTIEAALSASSSPSPSSSSIDPPPVPPVVAASSPDATTELTIPALAAVGSEATNQPNPNPTPNPNRCSSCRKKVGLTGFRCRCGTTFCGAHRYPEKHGCTFDFKSIGREEIARANPVVKADKLERI 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7805896 7806426 - CmaCh03G011620.1 Cma03g01162 290733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01162 176 SMART A20_3 13 37 IPR002653 GO:0003677|GO:0008270
Cma03g01162 176 Gene3D - 1 71 - -
Cma03g01162 176 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 176 - -
Cma03g01162 176 SMART AN1_Zf_4 117 154 IPR000058 GO:0008270
Cma03g01162 176 ProSiteProfiles Zinc finger A20-type profile. 10 44 IPR002653 GO:0003677|GO:0008270
Cma03g01162 176 SUPERFAMILY AN1-like Zinc finger 101 171 IPR035896 -
Cma03g01162 176 ProSiteProfiles Zinc finger AN1-type profile. 111 157 IPR000058 GO:0008270
Cma03g01162 176 Pfam A20-like zinc finger 14 37 IPR002653 GO:0003677|GO:0008270
Cma03g01162 176 Pfam AN1-like Zinc finger 117 153 IPR000058 GO:0008270
Cma03g01162 176 Gene3D - 96 172 IPR035896 -
Cma03g01162 176 MobiDBLite consensus disorder prediction 46 117 - -
Cma03g01162 176 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 58 - -
Cma03g01162 176 MobiDBLite consensus disorder prediction 48 66 - -
Cma03g01162 176 PANTHER BNAC06G14100D PROTEIN 1 176 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01162 Cma-Chr3:7805896 Cma20g00165 Cma-Chr20:804026 4.19E-58 dispersed
Cma02g01326 Cma-Chr2:7767056 Cma03g01162 Cma-Chr3:7805896 1.57E-54 wgd
Cma03g01162 Cma-Chr3:7805896 Cma07g00858 Cma-Chr7:3999737 3.48E-99 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01162 - - bhj:120073734 285.034