Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01169 ATGCAAAGAACAGCTCAAGAGTCAAGGGAAGAAATCAAACCTGTTCAAAGTAAGGTAGGTTCTCATCATTCAGATTTCTTATCAAATAAAGATCGAAAACTTTCTGCATTGAAAATTGGATTCAAAGGATCTCTAGAAGATGATATCAATCAGATTTTTGAGTCAATTAGTATTAAAAATGCATCCAAGAGCTTAGGTCATTCGCAAGTAGAGGTAAATGCACTGAGAAAAAGTACACTAAAGAAGCCGATCACTGTTGGCATACCTCGCTCACCAGGTATTGGTACTTCCGATTCTGGTAGTCTGAAGCAAGCACTTAGGGAACTATGCGTTTCGAAGGCGTCTGAAATGGCTGCTATGAAGAGAGCATCAAAATTGTCTAGCTCTTCAAGAATCTCCGAAGCGGGGCGGATCAAGACATTGTATAATTCAGTTATGGTTGATGCTACTGAGTCAGGCTCTTCTTCACGCGTGGTTGAAATATCTCTGGTTCAAGAGGAAAAGAAATTGAACTTTGAGAAGAGACTTGAGCATGTCCAGGCATCTGCTGTTAAATCTCCAGTTGAAAGTGCTCGTTCCTTTCAGTTGCCTGTTGCCAAAACAAAAAATTATACCGAGGTTGTTACTGTGGAACAAAACATCAATACCACGTCATCAAGGAAAGTTGGATCTCAAACATTAAGGGCAGAGCTGGAGAAGGAAGAGGAGTCCGTTACCCCACCATCGTTATCTTCCTGCACTATTGGCAAGGTTTTAGAGAAGGAGAAGAAAATTCTTGCTGGAAGCAGGGTAGCAGATAAAGCGGCATTGTCCAAGGCAAGTCGAAAAGGTAGGTTGCAAACTGCATCTTCATCTAAGTTGGGTAGTGGCAATAAGGTTACCAAGTTATCTAGAAGTGCCTCCCGTTCGGTTAAACCCATTATTAGGAACAAGGGGCTGGCTAAGAAGAAAGTCAAACAGGATTTTAGTTCTCCAACATGTAGTTCAAGCACATACAATGCAGTCAATGATGATATGGATCCTAGCAATAGGAAGTTGATATGTGAGCGATGCCACTGTGCATTGAATGGTGCAGCTAAAGACTCAATGAAGGGCTCTGCATCCCAGTTTAGTGGTCTTGACAGTGGTGTAAGCATGACGAATTCGAAATCAGGCGTTAGCAAATCAGGCATTAGCAAATCAGGCATCTACGGGGATGGTAAGGCTTCTGATGTTAGAGTAAAAAGAAATACAAGGGCACGAGATAAGGGCGAATTTTCTCAAAGCTCAAAAAGTAGTCAAGGTGATTACAGTAGCAGTACGACGAGTATTATAAGCGATGACAGCAATGGGCGTGGATCCAGTAATGGCAACAGACCTCATATGTCGAAAGACGTTAGGTGGGAAGCCATACGCCGCGCACAATTGGAGCATGGGGTCCTCAGCTTGCGGCATTTCAATCTTTTAAAGAAGCTTGGTTGTGGGGACATCGGAACCGTGTATCTTGCTGAGCTAACTGGCACTAGTTGCTTATTTGCCATCAAGGTCATGGACAATGAGTTTCTAGCAAGACGGAAGAAAATGCCGAGAGCGCAAACTGAGAGAGAAATACTTAGAATGCTAGATCATCCCTTCCTTCCAACACTTTATGTTCAATTTACTTCTGATAATTTATCATGTCTCGTCATGGAGTATTGTCCTGGAGGAGATCTTCATGTTCTTAGGCAGAAGCAGCTAAGCAGAGTTTTTCCTGAACCCGCAGCAAGATTTTATGTTGCTGAGGTTCTCCTTGCTTTGGAGTACTTGCACATGCTTGGCGTTATTTATCGAGATTTAAAACCTGAGAACATTCTTGTCAGGGAAGATGGTCACATAATGCTTACCGACTTTGACCTGTCGTTTAGGTGCACGGTCAGTCCAACGCTCCTGAAGTCGTCATCCTTCAATGCAGACTTGGTGAAAACCTCAGTTCCAGGTAGAGATTCTAGTTGTGTTGAGCCATTTTGCATTGGACCATCATGTCAAGTCCCATGCTTCAGCCCCAGGTTCTTACCTGCTACAGCCAAAGCAAGGAAGTCAAAACCTGACCTCACAACACAGTTCAGGTCATTGCCCCAGCTCATTGCCGAACCCACCGATGCACGATCAAATTCCTTCGTTGGCACTCACGAATATTTGGCTCCCGAGATCATTAAAGGAGAGGGTCACGGAGCTGCAGTCGATTGGTGGACGTTTGGTGTTTTTCTATATGAGCTTCTATATGGTAGAACCCCATTCAAGGGTTCAAACAATGAAGAAACATTAACCAATGTAATCATTCAGAGCCTCAGTTTTCCCGACAGCCCGATCGTTAGTTTCCAAGCAAGAGATCTTATCCGAGGACTGCTGGTAAAAGAACCCGAAAATCGATTCGGGACAGAGAAAGGGGCTGCAGAAATCAAACAGCACCCGTTCTTCGAGGGGCTAAACTGGGCATTGATCCGTTGTGCAATCCCTCCAGAACTTCCTGACTCATGTGATATGGATATTACAAGCATGATTACTCAACAAAACAAGTTCAGGTTTTTGGAAAGCAAGTCCACTGGAGAACACCTCGAGTTCGAACTGTTTTAG 2592 43.71 MQRTAQESREEIKPVQSKVGSHHSDFLSNKDRKLSALKIGFKGSLEDDINQIFESISIKNASKSLGHSQVEVNALRKSTLKKPITVGIPRSPGIGTSDSGSLKQALRELCVSKASEMAAMKRASKLSSSSRISEAGRIKTLYNSVMVDATESGSSSRVVEISLVQEEKKLNFEKRLEHVQASAVKSPVESARSFQLPVAKTKNYTEVVTVEQNINTTSSRKVGSQTLRAELEKEEESVTPPSLSSCTIGKVLEKEKKILAGSRVADKAALSKASRKGRLQTASSSKLGSGNKVTKLSRSASRSVKPIIRNKGLAKKKVKQDFSSPTCSSSTYNAVNDDMDPSNRKLICERCHCALNGAAKDSMKGSASQFSGLDSGVSMTNSKSGVSKSGISKSGIYGDGKASDVRVKRNTRARDKGEFSQSSKSSQGDYSSSTTSIISDDSNGRGSSNGNRPHMSKDVRWEAIRRAQLEHGVLSLRHFNLLKKLGCGDIGTVYLAELTGTSCLFAIKVMDNEFLARRKKMPRAQTEREILRMLDHPFLPTLYVQFTSDNLSCLVMEYCPGGDLHVLRQKQLSRVFPEPAARFYVAEVLLALEYLHMLGVIYRDLKPENILVREDGHIMLTDFDLSFRCTVSPTLLKSSSFNADLVKTSVPGRDSSCVEPFCIGPSCQVPCFSPRFLPATAKARKSKPDLTTQFRSLPQLIAEPTDARSNSFVGTHEYLAPEIIKGEGHGAAVDWWTFGVFLYELLYGRTPFKGSNNEETLTNVIIQSLSFPDSPIVSFQARDLIRGLLVKEPENRFGTEKGAAEIKQHPFFEGLNWALIRCAIPPELPDSCDMDITSMITQQNKFRFLESKSTGEHLEFELF 863
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7831679 7834582 + CmaCh03G011690.1 Cma03g01169 290740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01169 863 MobiDBLite consensus disorder prediction 362 391 - -
Cma03g01169 863 CDD STKc_phototropin_like 477 830 - -
Cma03g01169 863 MobiDBLite consensus disorder prediction 270 301 - -
Cma03g01169 863 SMART serkin_6 479 812 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g01169 863 Gene3D Phosphorylase Kinase; domain 1 477 558 - -
Cma03g01169 863 ProSiteProfiles Protein kinase domain profile. 479 812 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g01169 863 MobiDBLite consensus disorder prediction 362 457 - -
Cma03g01169 863 Gene3D Transferase(Phosphotransferase) domain 1 559 627 - -
Cma03g01169 863 PANTHER FLIPPASE KINASE 1-RELATED 21 863 - -
Cma03g01169 863 MobiDBLite consensus disorder prediction 420 454 - -
Cma03g01169 863 MobiDBLite consensus disorder prediction 276 301 - -
Cma03g01169 863 ProSitePatterns Serine/Threonine protein kinases active-site signature. 600 612 IPR008271 GO:0004672|GO:0006468
Cma03g01169 863 MobiDBLite consensus disorder prediction 1 26 - -
Cma03g01169 863 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 21 863 - -
Cma03g01169 863 SUPERFAMILY Protein kinase-like (PK-like) 454 830 IPR011009 -
Cma03g01169 863 Pfam Protein kinase domain 709 812 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g01169 863 Pfam Protein kinase domain 480 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g01169 863 MobiDBLite consensus disorder prediction 402 419 - -
Cma03g01169 863 Gene3D Transferase(Phosphotransferase) domain 1 705 830 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01169 Cma-Chr3:7831679 Cma20g00180 Cma-Chr20:873534 0 dispersed
Cma08g00240 Cma-Chr8:1334804 Cma03g01169 Cma-Chr3:7831679 1.24E-71 dispersed
Cma02g01339 Cma-Chr2:7843244 Cma03g01169 Cma-Chr3:7831679 0 wgd
Cma03g01169 Cma-Chr3:7831679 Cma07g00864 Cma-Chr7:4029515 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68436 PF00069 Pkinase 7.20E-36 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01169 - K08286 csv:101210027 1433.31