Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01176 ATGGAAATGCCTGGAAGGAGGTCAGATTACACGTTTTTAAGTCAAATTCCGGATGAGGAGGTTGGAACGGGACCTTCCACCTCGTTTTTCGGGTCAATAGCAGCTGAGGCAAACATTAGCAAGGGGAGAACGGATAGAGTCTTTGATTGGGACGGGAGTGGTGATCACAAGTTAAACACGCAGGCGAATCGGATTGGGAACCAGTATTCATGGATTGGTTTGCAGAGGCATTCTAGTGGAAGTAGCTACGATGATAGCTCTCTCTCCAGTGATTACTACCCACCAACGCTCTCAAACGCAGCAGCAAATGAGATAAATGCATTGGGATATATCCACGACGATGAATTTAGAGTCAAAGGTGTGGGAAGTGGAGGTTCGTCGGGGAAGAGCTGGGCACAGCAGACGGAAGAAAGTTATCAGTTGCAGCTGGCCTTGGCTCTCAGGCTTTCTTCAGAGGCCACTTGTGCCGATGATCCCAACTTTATGGATCTGATGCCAGACGAGGCAGCTTCAAGATCGTTGTCAAGTTCAGCTGAGGCTATCTCGCATCGATTTTGGGTAAATGGATGCATGTCATATTTTGAGAAGGTGCCAGATGGTTTGTACCTAATTCATGGGATGGACCCTTATGTATGGTCCTTATGCACCAATCTGAAAGAGGATGGGCGTATACCATCATTTGAATCTCTGAAGACAGTTGACTTCAACATCCGTTCATCAATTGAAGTAGCTTTCATAGATCGGCATAGTGATGCTAGCCTAAAGGAACTGCAAAAGAGGGTGCATAATATTTCTTCTAGCTGTATAACGACAGAAGAGGTTGCGGATCATTTAGCAAAGCTAGTATGCAATCATATGGGGGGTTCAGTTTCTGAGGGAGAAGATGCCTTAGTTCCCTCCTGGAGGGAATGCAGCGATGACTTAAAAGAATGTTTGGGATCTGTTGTGATTCCCTTGTGCAGCTTATCTGTTGGCCTTTGCAAGCATCGTGCTGTTCTATTCAAAGTGCTAGCAGATTCAATTGATTTGCCTTGTCGAATTGCCAGGGGCTGTAAATATTGCACTAGAGATGATGCTTCATCTTGCCTTGTTAGGTTCGGTCTTGATAGGGAATATGTCATTGATCTGATTGGGAAGCCTGGTTGCTTATGCGAACCTGATTGTTTGCTCAATGGTCCATCATCCATCTCAATTTCTTCACCATTGCGATTTCCAAGACTAAAACCTATTGAATCTAACATTGATTTCAGGTCACTGGCCAAACAGTATTTCTTGGATAGTCAATCACTTAATATTGTATTTGATGAAGCTTCTTCAGGGAATGTTGTATCTGGGAAGGATACTGCATGCTCTGTCTATCAAAGGCCATTCAACAGGAAGGATGTACATGGAAAAAACATAGTGCTTGCTGGTGACAGGGATAGAAGTCCTCAGTTAATGAATCCAAAAGTTACTCAACGGAATGCTCAAGATGGAAAGTCTGAGCAATTTAGATCATGTGATTCTACTACTCAACATAGTGTACAGTCTACCTCTTTTGTAGAAAATGTGGTTCGTTTAAACCAGATCTCACAGATTGGCTCCAGAGATTCTGAGCCTCTCTTAGCACTGCCCTGTCTAAAGATGGATCCTGCTAATAATTTATCATTCGTTGATGGTAATCGGCTGGTTAAAAAACCGAATCAGCTTTCCTTTGGCATAGAAGATTTTGTTATTCCATGGAATGATCTTATTTTGAGGGAGAAAATTGGAGCAGGTTCTTTTGGGACAGTGTATCATGCTGATTGGCACGGCTCAGATGTTGCGGTGAAGATTCTGATGGAACAAGACCTTAATGCAGAACGGTTCGAGGAATTTCTTAGGGAGGTTTCCATAATGAAATCTCTACGACATCCGAACATTGTTCTTTTTATGGGTGCAGTCACTGAGCCTCCAAACTTGTCCATTGTCACGGAATACTTATCAAGAGGGAGTTTGCACAGGCTTTTGCATAGACCTGGGGCACGAGAAGTCTTAGATGAGAGACGTCGGTTAAACATGGCACATGATGTTGCAAAAGGGATGAATTATCTTCACAAACGTAATCCCCCAATTGTACATCGTGATTTGAAATCTCCAAATATTTTGGTTGATAAGAAGTACACAGTAAAGATTTGTGATTTTGGGCTTTCACGCTTGAAGGCACACACATTTCTTTCATCAAAATCAGCTGCTGGGACTCCTGAATGGATGGCACCCGAAGTTCTCCGTGATGAGCCTTCAAATGAGAAATCAGATGTTTATAGCTTTGGTGTGATACTGTGGGAGCTTGCTTCACTGCTGCAACCATGGGGCAACTTGAACCCGGCGCAGGTTGTGGCAGCCGTGGGTTTCAAAGGCAAAAGGCTTGAGATCCCACGTGATTTAAATCCTCAAGTTGCTACTATTATAGAGGCTTGCTTCGCCAGCGAGCCCTGGAAACGTCCATCCTTTTATGAAATAATGGAATCATTGAAGCCATTGATCAAACCAGCTACACCTAATCAAGTTCGCCCAAACATGTCATTAGTTGCTCAATGA 2559 43.57 MEMPGRRSDYTFLSQIPDEEVGTGPSTSFFGSIAAEANISKGRTDRVFDWDGSGDHKLNTQANRIGNQYSWIGLQRHSSGSSYDDSSLSSDYYPPTLSNAAANEINALGYIHDDEFRVKGVGSGGSSGKSWAQQTEESYQLQLALALRLSSEATCADDPNFMDLMPDEAASRSLSSSAEAISHRFWVNGCMSYFEKVPDGLYLIHGMDPYVWSLCTNLKEDGRIPSFESLKTVDFNIRSSIEVAFIDRHSDASLKELQKRVHNISSSCITTEEVADHLAKLVCNHMGGSVSEGEDALVPSWRECSDDLKECLGSVVIPLCSLSVGLCKHRAVLFKVLADSIDLPCRIARGCKYCTRDDASSCLVRFGLDREYVIDLIGKPGCLCEPDCLLNGPSSISISSPLRFPRLKPIESNIDFRSLAKQYFLDSQSLNIVFDEASSGNVVSGKDTACSVYQRPFNRKDVHGKNIVLAGDRDRSPQLMNPKVTQRNAQDGKSEQFRSCDSTTQHSVQSTSFVENVVRLNQISQIGSRDSEPLLALPCLKMDPANNLSFVDGNRLVKKPNQLSFGIEDFVIPWNDLILREKIGAGSFGTVYHADWHGSDVAVKILMEQDLNAERFEEFLREVSIMKSLRHPNIVLFMGAVTEPPNLSIVTEYLSRGSLHRLLHRPGAREVLDERRRLNMAHDVAKGMNYLHKRNPPIVHRDLKSPNILVDKKYTVKICDFGLSRLKAHTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELASLLQPWGNLNPAQVVAAVGFKGKRLEIPRDLNPQVATIIEACFASEPWKRPSFYEIMESLKPLIKPATPNQVRPNMSLVAQ 852
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7858266 7866067 - CmaCh03G011760.1 Cma03g01176 290747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01176 852 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 119 842 - -
Cma03g01176 852 Gene3D Phosphorylase Kinase; domain 1 571 655 - -
Cma03g01176 852 Gene3D Transferase(Phosphotransferase) domain 1 656 844 - -
Cma03g01176 852 MobiDBLite consensus disorder prediction 474 496 - -
Cma03g01176 852 Pfam Protein tyrosine and serine/threonine kinase 578 831 IPR001245 GO:0004672|GO:0006468
Cma03g01176 852 ProSiteProfiles Protein kinase domain profile. 577 835 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g01176 852 CDD STKc_MAP3K-like 583 831 - -
Cma03g01176 852 SUPERFAMILY Protein kinase-like (PK-like) 558 831 IPR011009 -
Cma03g01176 852 PRINTS Tyrosine kinase catalytic domain signature 651 664 IPR001245 GO:0004672|GO:0006468
Cma03g01176 852 PRINTS Tyrosine kinase catalytic domain signature 692 710 IPR001245 GO:0004672|GO:0006468
Cma03g01176 852 PRINTS Tyrosine kinase catalytic domain signature 739 749 IPR001245 GO:0004672|GO:0006468
Cma03g01176 852 PRINTS Tyrosine kinase catalytic domain signature 758 780 IPR001245 GO:0004672|GO:0006468
Cma03g01176 852 PRINTS Tyrosine kinase catalytic domain signature 802 824 IPR001245 GO:0004672|GO:0006468
Cma03g01176 852 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 119 842 - -
Cma03g01176 852 MobiDBLite consensus disorder prediction 479 496 - -
Cma03g01176 852 SMART serkin_6 577 835 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g01176 852 Pfam Ethylene-responsive protein kinase Le-CTR1 178 384 - -
Cma03g01176 852 ProSitePatterns Protein kinases ATP-binding region signature. 583 604 IPR017441 GO:0005524
Cma03g01176 852 ProSitePatterns Serine/Threonine protein kinases active-site signature. 698 710 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01176 Cma-Chr3:7858266 Cma09g00596 Cma-Chr9:2765119 0 dispersed
Cma14g00279 Cma-Chr14:1176406 Cma03g01176 Cma-Chr3:7858266 0 wgd
Cma03g01176 Cma-Chr3:7858266 Cma06g00445 Cma-Chr6:2054179 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68437 PF07714 PK_Tyr_Ser-Thr 7.40E-70 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01176 K14510 - csv:101208800 1439.86