Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01195 ATGACGAAGCCATCCTTCCCATCGACATGCCTGTTGGCATCTCTGCTAAGCCTGGTGTTGCTTATTATGGCTCATGCACACGCCGCGGCCTCGATGGGGCATCGCCCTTATGCGAAAGCGCACAGGGAATTAGGCGCGCGGCTTGTTAAAAAGCATAACAGGCCGCCGTTTAAGCCCGGCCCTTGGAAACGCGCTCGTGCTACCTTCTACGAAGGTGGCCCTGGAACCTTTGGTAGTGCATGTGGGTACAGCGACGTGGAAAAGGAAGGGTATGGGCTGCAGACGGCGGCATTAAGCATGGCGCTGTTTAACAACGGGCAGAAATGCGGTGCTTGCTTTGAACTCAAATGCATGGACAATCCTGATTGCAAGCCTGGGCAGCCTTCCCTCGTGGTAACCGGCACCAACCACTGTCCACCCAACTACAACGCTGCCAACGACAACGGCGGATGGTGCAATCCCCCCCACGAGCATTTCGACATAGCCAAGCCTGTTTTCGCCAACCTTGCAGACTACAAGGCCGGTGTCATTCCCATCACTTATCGCAGGGTTCCATGCCAAAAGCAAGGAGGAATTCGCTTCACAATCACCGGAAACCCATACTTCAACGAAGTAATGGTGTGGAACGTTGGAGGAGCTGGGGACATAACGGCTGTCCAAGTCAAGGGCCACCGTAAGCTGAAATGGACCGCCATGTCTCGTCTGTGGGGTCAAAAATGGACCACCAACGCCATGATGGTTGGCGAGTCGCTCACCTTCAGGGTTCGAGCTAGCGATGGCAGATTCTCCACTGCATGGCATGTTGCTCCCGTCAATTGGCAGTTTGGTCAGACCTTCGAAGGCAAGAACTTTAAGTAG 858 54.55 MTKPSFPSTCLLASLLSLVLLIMAHAHAAASMGHRPYAKAHRELGARLVKKHNRPPFKPGPWKRARATFYEGGPGTFGSACGYSDVEKEGYGLQTAALSMALFNNGQKCGACFELKCMDNPDCKPGQPSLVVTGTNHCPPNYNAANDNGGWCNPPHEHFDIAKPVFANLADYKAGVIPITYRRVPCQKQGGIRFTITGNPYFNEVMVWNVGGAGDITAVQVKGHRKLKWTAMSRLWGQKWTTNAMMVGESLTFRVRASDGRFSTAWHVAPVNWQFGQTFEGKNFK 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7980661 7981815 - CmaCh03G011950.1 Cma03g01195 290766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01195 285 Gene3D - 46 187 IPR036908 -
Cma03g01195 285 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 78 191 IPR007112 -
Cma03g01195 285 PANTHER EXPANSIN-A15 12 285 IPR002963 GO:0009664
Cma03g01195 285 Pfam Lytic transglycolase 95 181 IPR009009 -
Cma03g01195 285 PANTHER EXPANSIN-A32 12 285 - -
Cma03g01195 285 Pfam Expansin C-terminal domain 192 270 IPR007117 -
Cma03g01195 285 PRINTS Expansin/Lol pI family signature 61 76 IPR007118 GO:0005576
Cma03g01195 285 PRINTS Expansin/Lol pI family signature 99 117 IPR007118 GO:0005576
Cma03g01195 285 PRINTS Expansin/Lol pI family signature 174 190 IPR007118 GO:0005576
Cma03g01195 285 PRINTS Expansin/Lol pI family signature 229 243 IPR007118 GO:0005576
Cma03g01195 285 PRINTS Expansin/Lol pI family signature 267 281 IPR007118 GO:0005576
Cma03g01195 285 SUPERFAMILY Barwin-like endoglucanases 61 209 IPR036908 -
Cma03g01195 285 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 201 281 IPR007117 -
Cma03g01195 285 SMART dpbb_1 95 181 IPR007112 -
Cma03g01195 285 SUPERFAMILY PHL pollen allergen 188 281 IPR036749 -
Cma03g01195 285 Gene3D - 189 284 IPR036749 -
Cma03g01195 285 PRINTS Expansin signature 90 104 IPR002963 GO:0009664
Cma03g01195 285 PRINTS Expansin signature 130 140 IPR002963 GO:0009664
Cma03g01195 285 PRINTS Expansin signature 149 166 IPR002963 GO:0009664
Cma03g01195 285 PRINTS Expansin signature 166 179 IPR002963 GO:0009664
Cma03g01195 285 PRINTS Expansin signature 190 202 IPR002963 GO:0009664
Cma03g01195 285 PRINTS Expansin signature 202 223 IPR002963 GO:0009664
Cma03g01195 285 PRINTS Expansin signature 238 259 IPR002963 GO:0009664
Cma03g01195 285 PRINTS Expansin signature 267 283 IPR002963 GO:0009664
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01195 Cma-Chr3:7980661 Cma07g00999 Cma-Chr7:5154276 3.65E-102 dispersed
Cma03g01195 Cma-Chr3:7980661 Cma02g00797 Cma-Chr2:4725802 2.35E-103 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01195 - - mcha:111013610 455.292