Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01199 ATGCCGATCCGTAACATCGCCGTTGGAAGGCCCGATGAGGCTACCAGTCCGGATGCTTTGAAGGCTGGGTTGGCTGAGTTCATTTCCACCTTGATTTTTGTTTTTGCCGGCCAAGGTTCCGGCATAGCCTTCAGTAAGCTTACTGACGGCGGCGCCGCCACTCCCGCTGGCCTCATCTCCGCCTCCATCGCTCATGCCTTTGCCCTGTTTGTCGCCGTCTCCGTCGGCGCTAACATCTCTGGCGGCCACGTCAACCCCGCTGTTACCTTCGGCGCCTTCGTCGGCGGTAACATCACCCTCCTACGTGGCATCATCTACTGGATTGCCCAGCTCCTCGGATCCGTCGTTGCCTGCTTGCTCCTTAAGTTCGTTACTGGCTTGCCCACCGGAAGCTTCGCTCTATCAGCTGGAGTCGGTGAACTAAACGCCTTCGTTTTCGAGATCGTGATGACATTCGGATTGGTGTACACAGTGTACGCGACCGCAGTGGATCCCAAGAAGGGCAGTTTGGGAACAATTGCACCCATCGCAATCGGTTTCATCGTCGGAGCTAACATCTTAGCCGGTGGAGCATTCACCGGAGCCTCGATGAACCCAGCGGTGGCATTCGGGCCATCCGTGGTGAGCTGGTCATGGGACAACCACTGGGTCTACTGGGCTGGACCTCTGATCGGAGGTGGTCTTGCTGGGCTCATCTACGAGTTCATCTTCATCTCCAACTCCCACGAGCAACTCCCAACCACCGACTACTAA 753 56.97 MPIRNIAVGRPDEATSPDALKAGLAEFISTLIFVFAGQGSGIAFSKLTDGGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGIIYWIAQLLGSVVACLLLKFVTGLPTGSFALSAGVGELNAFVFEIVMTFGLVYTVYATAVDPKKGSLGTIAPIAIGFIVGANILAGGAFTGASMNPAVAFGPSVVSWSWDNHWVYWAGPLIGGGLAGLIYEFIFISNSHEQLPTTDY 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8008162 8009857 + CmaCh03G011990.1 Cma03g01199 290770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01199 250 PANTHER AQUAPORIN TIP1-1 1 250 - -
Cma03g01199 250 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma03g01199 250 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma03g01199 250 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma03g01199 250 PRINTS Major intrinsic protein family signature 146 164 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma03g01199 250 PRINTS Major intrinsic protein family signature 179 201 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma03g01199 250 PRINTS Major intrinsic protein family signature 216 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma03g01199 250 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Cma03g01199 250 Pfam Major intrinsic protein 14 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma03g01199 250 CDD MIP 21 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma03g01199 250 PANTHER AQUAPORIN-8 1 250 IPR034294 -
Cma03g01199 250 Gene3D Glycerol uptake facilitator protein. 4 250 IPR023271 -
Cma03g01199 250 SUPERFAMILY Aquaporin-like 13 245 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01199 Cma-Chr3:8008162 Cma13g00950 Cma-Chr13:7449215 1.78E-104 dispersed
Cma02g01534 Cma-Chr2:8729369 Cma03g01199 Cma-Chr3:8008162 1.97E-102 transposed
Cma08g00719 Cma-Chr8:4353546 Cma03g01199 Cma-Chr3:8008162 1.38E-98 transposed
Cma12g00256 Cma-Chr12:1299988 Cma03g01199 Cma-Chr3:8008162 1.52E-80 transposed
Cma15g01372 Cma-Chr15:8592592 Cma03g01199 Cma-Chr3:8008162 9.01E-61 transposed
Cma14g00234 Cma-Chr14:1032156 Cma03g01199 Cma-Chr3:8008162 2.37E-127 wgd
Cma03g01199 Cma-Chr3:8008162 Cma07g00887 Cma-Chr7:4200653 2.10E-172 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01199 K09873 - csv:101204225 469.159