Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01200 ATGGGAGGCGTAAGATTCAGCATCAGGACTTCACGAAGTTCTGTCCCAATGAGGAATTTCGTCTTGCAAGTTCTATTGGGCCGATGGTTCACCGTCTTCGCTTCTTTATTGATCATGTCCGTTTCCGGTGCCACCTACATGCTTGCCCTCTACTCCGCCGACATCAAATCCTCCTTGGATTACGATCAGACCACGCTCAACCTCATTGGCTTCTTCAAGGATCTGGGCGCCAACGTTGGAGTCTTCTCGGGCCTCATCAATGAAATTACACCGCCTTGGGTCGTCCTTCTAATTGGCGGGGTAATGAATTTCTTTGGCTATTTCATGATTTGGCTTTCTGTCACTCACCGAATCCCCAAACCCAAACTGCCCGCTATGTGTTTGTGTATATGCCTAGGTGCGAATTCTCAGACATTTGCTAATACAGGGGCTTTGATCCCTTCAGTGAAGAATTTCCCCCAAAATCGAGGTAATGTATTGGGTTTATTGAAAGGCTATGTTGGGTTGAGTGGGGCAATTTTGACTCAGATTTACCATGCTTTTTATGGAGATGATTCTAAGGATTTTATCTTGCTCATTGCTTGGCTGCCTACTGCTGTTTCTTTCTTGCTTCTTCGGGTTGTTAGAGTAGTGGAAGTGGACCGAATATCCATATCCAATGATCTAAAGAATTTCTATTATATGCTCTACACTTCCCTTGTTCTTGCTGGCTTCCTCATGATCTTGGTCATTATTCAAAACGAGCTCATTTTTACTAGAATTCAGTATTTGGGTTGTGCATTTATCCTCCTAGTGCTTCTTTTTCTTCCCCTTGTCGTTGTTATAAGAGAAGAATTCCTCATGAGGAAGAGGAAATCACAAGATATGGATTTAATTTCTGTGCCTCCACTAGACCCATTTCCCGTTGAATTATCATCCTCTAGACCACCAATTTCTTGCTTTAAAAATGTGTTCAGACCGCCGGAAAGAGGAGACGATTACACCATTTTACAAGCAATTTTCAGTGTAGATATGTTGATACTGTTTGTTGCTACAATCTGTGGGGCTGGTGGGGCTTTGACTGCAATGGACAACTTGGGTCAGATAGGCAGCTCCCTTGGCTACTCAGCTCATAGCATTTCTACTTTCACTTCCCTCATGAGTATATGGGGCTTTCTCGGTCGAGCATTTTCAGGTTATGCTTCTGAATTCTTATGGACCAAATATAGCTTCTCTCGCCCTCTGTTCTTCACTCTTGTGCTTCTTTTCTCTTGCGTTGGTCATCTTCTAATTGCCTTTGGAGTCCCAACTTCCCTTTATTTTTCTTCTGTGATCATTGGATTTTGCTTTGGAGCACAATGGCCATTGATTTTTGCCATTGTTTCTGAATTATTTGGGTTGAAATACTATGCAACTTTGTATAGCATAAGCGGCATTGCTAGCCCAGTTGGCTCATACATTTTCAACGTGAAAGTAGCTGGCTTTTTATACGACCAAGAGGCTAGAAAGCAAATGGCTGCCTCTGGTCTTGCAAGTGTTGCTGGTAGGGACTTGGCCTGCAAGGGCGTCCATTGTTATAGATTAGCTTTTCTGATAATCACTGCTGCAACCGTGTTGGGTTGTGTTGTTTCTTTCATTTTGGTGCTTCGAACTTGGGAATTCTATAAGGGGGATATCTATAAGAAGTTTAGAGAGGAAAGACAGGAAACAGAATGA 1695 42.95 MGGVRFSIRTSRSSVPMRNFVLQVLLGRWFTVFASLLIMSVSGATYMLALYSADIKSSLDYDQTTLNLIGFFKDLGANVGVFSGLINEITPPWVVLLIGGVMNFFGYFMIWLSVTHRIPKPKLPAMCLCICLGANSQTFANTGALIPSVKNFPQNRGNVLGLLKGYVGLSGAILTQIYHAFYGDDSKDFILLIAWLPTAVSFLLLRVVRVVEVDRISISNDLKNFYYMLYTSLVLAGFLMILVIIQNELIFTRIQYLGCAFILLVLLFLPLVVVIREEFLMRKRKSQDMDLISVPPLDPFPVELSSSRPPISCFKNVFRPPERGDDYTILQAIFSVDMLILFVATICGAGGALTAMDNLGQIGSSLGYSAHSISTFTSLMSIWGFLGRAFSGYASEFLWTKYSFSRPLFFTLVLLFSCVGHLLIAFGVPTSLYFSSVIIGFCFGAQWPLIFAIVSELFGLKYYATLYSISGIASPVGSYIFNVKVAGFLYDQEARKQMAASGLASVAGRDLACKGVHCYRLAFLIITAATVLGCVVSFILVLRTWEFYKGDIYKKFREERQETE 564
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8010204 8011898 + CmaCh03G012000.1 Cma03g01200 290771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01200 564 CDD MFS_Mch1p_like 27 534 - -
Cma03g01200 564 PANTHER MFS TRANSPORTER 14 563 - -
Cma03g01200 564 Gene3D MFS general substrate transporter like domains 328 547 IPR036259 -
Cma03g01200 564 Pfam Major Facilitator Superfamily 342 541 IPR011701 GO:0022857|GO:0055085
Cma03g01200 564 SUPERFAMILY MFS general substrate transporter 29 547 IPR036259 -
Cma03g01200 564 Pfam Nodulin-like 28 275 IPR010658 -
Cma03g01200 564 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 14 563 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01200 Cma-Chr3:8010204 Cma04g01389 Cma-Chr4:7099324 0 dispersed
Cma15g00501 Cma-Chr15:2251275 Cma03g01200 Cma-Chr3:8010204 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01200 - - csv:101203981 911.753