Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01203 ATGTTGACCACAACCTGCATTGTGCTGCTAGCTTTGCTGCTACCCTCCTGCTGGCCGCTAGGTGCCAGTGCCGCCGCCGCTCTCAACCTCACTCTCCCCGGCCAGCATCCGAGCCCTGAACTGGTTGCTCAAGAAGTTCACAGGAAAGTGAATGCTTCCGTAACGAGAAGGCAATTGCTCCAAAGCTTAGAGAAAGACGAATCTCCTTCTTGTTACACCGGGAACCCCATCGACGACTGCTGGAAATGCGATCCAAACTGGCCAAACAACCGCCAGCGCCTAGCCGATTGCGCCATTGGATTCGGCCAGTACGCACTCGGCGGCAAGAACGGCGAGTTCTACATCGTCACAGACGATTCCGACGACGATGCAGTCAATCCAAAGCCCGGAACGTTACGATACGCCGTGATACAGCCTCAACCTCTCTGGATCGTCTTCCCGGCCAACATGCTCATCAAACTCAAACAGGAACTCATCTTCAACAGCTACAAAACCCTAGACGGCCGCGGCGCCAATGTCCACATCGTCGGCGGTGGCTGCATTACATTGCAGTACATAAGCAACGTCATCATCCACAACATCCACATCCACCATTGTTATCCATCAGGTAACACCATGGTCCGATCGAGTCCGACGCATTATGGATATCGCACGAAATCGGACGGCGACGGGATATCCATCTTCGGATCGAAGGACGTATGGATTGACCATTGCTCACTCTCGCATTGCAAAGATGGGCTGATTGACGCGGTGATGGGCTCCACCGGAATCACAATTTCAAACAATTATTTCTCGCATCACGATGAGGTTATGCTTTTGGGTCACAGCGATAGCTACTTGCCGGATTCCGGAATGCAGGTAACAATAGCGTTCAACCACTTCGGCGAGAAGCTAGTCCAAAGGATGCCGCGATGCCGGCGAGGGTACATTCACGTCGTCAACAACGACTTCACCCAATGGGAAATGTACGCAATCGGCGGCAGTGGGAGCCCCACCATCAACAGCCAAGGCAACCGCTACACCGCCCCATACGACCGCAACGCCAAGGAGGTGACCAAGCGGGTCGAAACATCTGAGTCCGAGTGGCGTGGCTGGAACTGGCGTTCCGACGGCGACATCCTCGTTAACGGCGCCTTCTTCGTTACCTCTGGCCAAGGCCTCGAAGTCAAGTACGAGAAGGCCTACAGCGTCGAGCCCAAATCAGTCGCCCTGATCGACCAGCTCACTTGGCACGCCGGCCCGCTCGGCGTCGGCGGCAGGGATAACAATTTGGGGATGTGGACCACTGGCCCCAATGGTGGGGGGGGCTTTATCATTGGGTCTGGTCCGGACTACACTGACGACATGTCGGAAAGCTTGTCTCGGATTGGGTCTCCTTATTTTGTCATGGTAGTGTCTGTTTTGTTGTGTTCTTTTTGCGCATTGGCACTCGCATTTGTGCAATGA 1446 54.63 MLTTTCIVLLALLLPSCWPLGASAAAALNLTLPGQHPSPELVAQEVHRKVNASVTRRQLLQSLEKDESPSCYTGNPIDDCWKCDPNWPNNRQRLADCAIGFGQYALGGKNGEFYIVTDDSDDDAVNPKPGTLRYAVIQPQPLWIVFPANMLIKLKQELIFNSYKTLDGRGANVHIVGGGCITLQYISNVIIHNIHIHHCYPSGNTMVRSSPTHYGYRTKSDGDGISIFGSKDVWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHDEVMLLGHSDSYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDFTQWEMYAIGGSGSPTINSQGNRYTAPYDRNAKEVTKRVETSESEWRGWNWRSDGDILVNGAFFVTSGQGLEVKYEKAYSVEPKSVALIDQLTWHAGPLGVGGRDNNLGMWTTGPNGGGGFIIGSGPDYTDDMSESLSRIGSPYFVMVVSVLLCSFCALALAFVQ 481
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 8019595 8022345 - CmaCh03G012030.1 Cma03g01203 290774
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01203 481 Gene3D - 74 416 IPR012334 -
Cma03g01203 481 PRINTS Pollen allergen Amb family signature 97 114 IPR018082 -
Cma03g01203 481 PRINTS Pollen allergen Amb family signature 121 146 IPR018082 -
Cma03g01203 481 PRINTS Pollen allergen Amb family signature 157 173 IPR018082 -
Cma03g01203 481 PRINTS Pollen allergen Amb family signature 221 242 IPR018082 -
Cma03g01203 481 PRINTS Pollen allergen Amb family signature 301 320 IPR018082 -
Cma03g01203 481 PRINTS Pollen allergen Amb family signature 323 342 IPR018082 -
Cma03g01203 481 PRINTS Pollen allergen Amb family signature 365 389 IPR018082 -
Cma03g01203 481 PRINTS Pollen allergen Amb family signature 394 417 IPR018082 -
Cma03g01203 481 PANTHER PECTATE LYASE 12-RELATED 3 436 - -
Cma03g01203 481 PANTHER PECTATE LYASE 18-RELATED 3 436 IPR045032 GO:0030570
Cma03g01203 481 SUPERFAMILY Pectin lyase-like 69 388 IPR011050 -
Cma03g01203 481 Pfam Pectate lyase 155 338 IPR002022 -
Cma03g01203 481 SMART amb_all 149 346 IPR002022 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01203 Cma-Chr3:8019595 Cma04g02549 Cma-Chr4:17458857 0 dispersed
Cma15g00500 Cma-Chr15:2246288 Cma03g01203 Cma-Chr3:8019595 0 wgd
Cma18g00911 Cma-Chr18:7813567 Cma03g01203 Cma-Chr3:8019595 0 wgd
Cma03g01203 Cma-Chr3:8019595 Cma07g00892 Cma-Chr7:4221789 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01203 K01728 - csv:101203012 858.596