Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01229 ATGGCCCCCATCGAGCCCATCTGCAAGAGCTCCACCAGTGACCCGCTCAACTGGGGTGTGGCGGCTGACTCCCTCAAGGGAAGCCATCTCGACGAGGTGAAGCGCATGGTGGAGGAGTACCGGAGCCCCCTTGTCAAGCTTGGCGGTCAAACCCTCACCATTTCCCAAGTGGCTGCCATTGCTACTAGGGACTCTGATGTAACTGTCGAGCTTGCTGAGTCTTCCAGAGCTGGTGTTAAGGCCAGTAGTGATTGGGTTATGGAGAGTATGAATAAGGGGACTGATAGCTATGGCGTTACTACTGGCTTTGGTGCTACCTCCCACAGAAGAACCAACCAAGGTGGCGCTCTCCAAAAGGAGTTGATTAGGTTTTTGAACGCTGGCATTTTTGGAAGTGGAGCAGAGTCGGATCATACTCTGCCCCATTCCGCTACCAGGGCGGCCATGTTGGTCAGAATCAATACTCTTCTTCAGGGCTACTCGGGTATTAGATTTGAGATTTTGGAAGCCATAACCAAACTCTTGAACCATAATATCACTCCTTGCCTGCCTCTTCGTGGAACCATTACTGCTTCTGGAGACCTTGTTCCTCTTTCTTACATTGCTGGACTGCTCACTGGCCGACCCAACTCGAAAGCGGTTGGTCCAAATGGAGAACGTCTTGATGCCAAGGAGGCTTTCCAACAAGCTGCTATTCCTTCTGGGTTCTTTGAGTTGCAGCCTAAGGAAGGGTTGGCTCTTGTCAACGGCACTGCTGTTGGCTCTGGATTGGCTTCTATTGTTCTGTTTGAGGCTAATATTTTGGCGGTTCTGTCTGAGATTTTGTCTGCAATCTTCGCTGAAGTGATGCAAGGCAAGCCTGAATTCACTGACCATTTGACCCACAAGTTGAAGCATCATCCGGGTCAAATTGAGGCGGCTGCAATTATGGAACACATTTTGGATGGGAGTTCTTACATGAAAACCGCTAAAGAATTACATGAAATCGATCCTCTTCAAAAGCCAAAGCAAGATCGCTATGCACTAAGAACATCTCCTCAATGGCTTGGTCCATTGATCGAAGTTATTCGTTTCTCCACAAAGTCAATTGAGCGAGAGATCAATTCAGTGAACGACAACCCTTTGATTGATGTCTCAAGGAACAAGGCTTTGCATGGAGGCAACTTCCAAGGAACCCCAATCGGAGTATCCATGGACAACACTCGTCTGGCCGTTGCTTCAATCGGAAAGCTCATGTTTGCCCAATTCTCAGAACTTGTGAATGATTTCTACAACAACGGGCTGCCTTCAAATCTCTCTGCAAGCAGAAACCCAAGTTTGGATTATGGATTCAAAGGCGCCGAGATCGCCATGGCTTCCTATTGCTCCGAGCTTCAGTATCTAGCAAACCCCGTAACAAGTCACGTCCAAAGTGCAGAGCAACACAATCAAGATGTCAACTCTCTCGGTTTGATTTCTTCTAGAAAAACCGCTGAGGCAATTGACATTTTAAAACTCATGTGTTCCACGTTTTTGGTTGCTCTATGTCAAGCAATTGACTTGAGACATTTGGAGGAAAACTTGAAGAGCACCGTGAAGAGCACAGTAAGTCAAGTAGCCAAGAAAGTTCTCACCACAGGCACTAACGGCGCACTTCACCCATCAAGGTTTTGCGAGAAAGATTTATTGAAGGTGGTGGACAGAGAATACACCTTCGCCTATGTGGATGATGCATGCAGTGGCACTTACCCATTGATGCAAAAACTGAGACAAGTTCTAGTGGAGCACGCACTCGCAAATGGTGATGGCGAACAGAACACAAACACTTCAATCTTCCAAAAGATTGCTGCTTTTGAAGAGGAATTGAAGGCTGTCTTACCAAAGGAAGTTGAAAATACAAGGTTAGCATATGAGAGCGGAAATGCACAAATTAAGAACCAAATTGAAGAATGCAGATCTTACCCATTATATAGATTTGTGAGGAAAGAATTGGGAACAAATTTGGTAACAGGTGAGAAAGTGATATCTCCCGGAGAAGAATGCGAGAAGGTATTCACGGCTTTGTGTCAAGGAAAGATGATTGATTCTATCTTAGAATGTTTGAAGGAGTGGAATGGGGCGCCAATCCCCATATGTTAG 2118 46.36 MAPIEPICKSSTSDPLNWGVAADSLKGSHLDEVKRMVEEYRSPLVKLGGQTLTISQVAAIATRDSDVTVELAESSRAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTNQGGALQKELIRFLNAGIFGSGAESDHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGERLDAKEAFQQAAIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKELHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAVASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMCSTFLVALCQAIDLRHLEENLKSTVKSTVSQVAKKVLTTGTNGALHPSRFCEKDLLKVVDREYTFAYVDDACSGTYPLMQKLRQVLVEHALANGDGEQNTNTSIFQKIAAFEEELKAVLPKEVENTRLAYESGNAQIKNQIEECRSYPLYRFVRKELGTNLVTGEKVISPGEECEKVFTALCQGKMIDSILECLKEWNGAPIPIC 705
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8135610 8137727 + CmaCh03G012290.1 Cma03g01229 290800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01229 705 CDD PAL-HAL 50 515 IPR001106 -
Cma03g01229 705 Gene3D Fumarase/aspartase (Central domain) 252 700 - -
Cma03g01229 705 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 11 705 - -
Cma03g01229 705 Gene3D - 6 251 IPR024083 -
Cma03g01229 705 PANTHER HISTIDINE AMMONIA-LYASE 11 705 IPR001106 -
Cma03g01229 705 Gene3D - 518 639 IPR023144 -
Cma03g01229 705 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 187 203 IPR022313 GO:0016841
Cma03g01229 705 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 14 695 IPR005922 GO:0005737|GO:0006559|GO:0016841
Cma03g01229 705 SUPERFAMILY L-aspartase-like 14 705 IPR008948 GO:0003824
Cma03g01229 705 Pfam Aromatic amino acid lyase 52 525 IPR001106 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01229 Cma-Chr3:8135610 Cma07g00918 Cma-Chr7:4366313 0 dispersed
Cma03g01229 Cma-Chr3:8135610 Cma03g01230 Cma-Chr3:8140438 0 tandem
Cma10g00748 Cma-Chr10:3409506 Cma03g01229 Cma-Chr3:8135610 0 transposed
Cma18g00896 Cma-Chr18:7744795 Cma03g01229 Cma-Chr3:8135610 0 wgd
Cma20g00497 Cma-Chr20:2435852 Cma03g01229 Cma-Chr3:8135610 0 wgd
Cma03g01229 Cma-Chr3:8135610 Cma07g00912 Cma-Chr7:4328216 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01229 K10775 - csv:101218856 1297.34