Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01230 ATGGCACCCAGCCAGCAAAACAGTGACAGTTTCTGCACCATTACTGCTCATCACCCCGACCCACTTAACTGGGGCCTGGCTGCCGACTCCCTCAAGGGAAGCCATCTCGACGAGGTGAAGCGCATGGTGGAGGAGTACCGGAGGCCCCTTGTCAAGCTTGGCGGTCAAACCCTCACCATTTCCCAAGTGGCTGCCATTGCTACTAGGGACTCTGATGTAACTGTCCAGCTTTCTGAGTCTTCCAGAGCTGGTGTTAAGGCCAGTAGTGATTGGGTTATGGAGAGTATGAATAAGGGGACCGATAGCTATGGCGTTACTACTGGCTTTGGTGCTACCTCCCACAGAAGAACCAACCAAGGTGGCGCTCTCCAAAAGGAGTTGATTAGGTTTTTGAACGCTGGCATTTTTGGAAGTGGAGCAGAGTCGGACCATACTCTGCCCCATTCCGCTACCAGGGCGGCCATGTTGGTCAGAATCAATACTCTTCTTCAGGGCTACTCGGGTATTAGATTTGAGATTTTGGAAGCCATAACCAAACTCTTGAACCACAATATCACTCCTTGCCTGCCTCTTCGTGGAACCATTACTGCTTCTGGAGACCTTGTTCCTCTTTCTTACATTGCTGGACTGCTCACTGGCCGACCCAACTCGAAAGCGGTTGGTCCAAATGGAGAACGACTTGATGCCAAGGAGGCTTTCCAACAAGCTGCTATTCCTTCTGGGTTCTTTGAGTTGCAGCCTAAGGAAGGGTTGGCTCTTGTCAACGGCACTGCTGTTGGCTCTGGATTGGCTTCTATTGTTCTGTTTGAGGCTAATATTTTGGCTGTTCTGTCTGAGATTTTGTCTGCAATCTTCGCTGAAGTGATGCAAGGCAAGCCTGAATTCACTGACCATTTGACCCACAAGTTGAAGCATCATCCTGGTCAAATTGAGGCGGCTGCAATTATGGAACACATTTTGGATGGGAGTTCTTACATGAAAACCGCTAAAGAATTACATGAAATCGATCCTCTTCAAAAGCCAAAGCAAGATCGCTATGCACTAAGAACATCTCCTCAATGGCTTGGTCCATTGATCGAAGTTATTCGATTCTCCACAAAGTCAATTGAGCGAGAGATCAATTCAGTGAACGACAACCCTTTGATTGATGTCTCAAGGAACAAGGCTTTGCATGGAGGCAACTTCCAAGGAACCCCAATCGGAGTATCCATGGACAACACTCGTCTGGCCGTTGCTTCAATCGGAAAGCTCATGTTTGCCCAATTCTCAGAACTTGTGAATGATTTCTACAACAATGGGCTGCCTTCAAATCTCTCTGCAAGCAGAAACCCAAGTTTGGATTATGGATTCAAAGGCGCCGAGATCGCCATGGCTTCCTATTGCTCCGAGCTTCAGTATCTAGCAAACCCCGTAACAAGTCACGTCCAAAGTGCTGAGCAACACAATCAAGATGTCAACTCTCTCGGTTTGATTTCTTCTAGAAAAACCGCTGAGGCAATTGACATTTTAAAACTCATGTGTTCCACGTTTTTGGTTGCTCTATGTCAAGCAATTGACTTGAGACATTTGGAGGAAAACTTGAAGAGCACCGTGAAGAGCACAGTAAGTCAAGTAGCCAAGAAAGTTCTCACCACAGGCACTAACGGCGCACTTCACCCATCAAGGTTTTGCGAGAAAGATTTATTGAAGGTGGTGGACAGAGAATACACCTTCGCCTATGTGGATGATGCATGCAGTGGCACTTATCCATTGATGCAAAAACTGAGACAAGTTCTAGTGGAGCACGCTTTGAAAAATGGGGAAGATGAGAAGAACACAAGCACTTCAATCTTTCAAAAGATTGGAGTTTTCGAAGAGGAACTGAAAACCATGTTGCCCAAGGAGGTGGAAAATGCAAGAGTATCGTATGAAAACGGAACGTCAGGCATTGAGAACCAAATTAAAGAATGCAGATCTTATCCGCTATACAAGTTTGTGAGGGAAGAGGTAGGAACAGGGTTGCTGACCGGAGAGAAGGTGATATCTCCGGGAGAAGAATGTGAAAAGGTATTCACAGCTCTTTGCCAAGGAAAGATGATCGACCCAATTCTCGAGTGTTTGAAGGAATGGAATGGTGCTCCAATCCCCATTTGCTAG 2136 46.68 MAPSQQNSDSFCTITAHHPDPLNWGLAADSLKGSHLDEVKRMVEEYRRPLVKLGGQTLTISQVAAIATRDSDVTVQLSESSRAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTNQGGALQKELIRFLNAGIFGSGAESDHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGERLDAKEAFQQAAIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKELHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAVASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMCSTFLVALCQAIDLRHLEENLKSTVKSTVSQVAKKVLTTGTNGALHPSRFCEKDLLKVVDREYTFAYVDDACSGTYPLMQKLRQVLVEHALKNGEDEKNTSTSIFQKIGVFEEELKTMLPKEVENARVSYENGTSGIENQIKECRSYPLYKFVREEVGTGLLTGEKVISPGEECEKVFTALCQGKMIDPILECLKEWNGAPIPIC 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8140438 8142573 - CmaCh03G012300.1 Cma03g01230 290801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01230 711 PANTHER HISTIDINE AMMONIA-LYASE 16 711 IPR001106 -
Cma03g01230 711 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 193 209 IPR022313 GO:0016841
Cma03g01230 711 Pfam Aromatic amino acid lyase 58 531 IPR001106 -
Cma03g01230 711 Gene3D Fumarase/aspartase (Central domain) 258 706 - -
Cma03g01230 711 CDD PAL-HAL 56 521 IPR001106 -
Cma03g01230 711 Gene3D - 524 645 IPR023144 -
Cma03g01230 711 SUPERFAMILY L-aspartase-like 20 711 IPR008948 GO:0003824
Cma03g01230 711 Gene3D - 12 257 IPR024083 -
Cma03g01230 711 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 16 711 - -
Cma03g01230 711 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 20 701 IPR005922 GO:0005737|GO:0006559|GO:0016841
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01230 Cma-Chr3:8140438 Cma07g00920 Cma-Chr7:4385994 0 dispersed
Cma10g00748 Cma-Chr10:3409506 Cma03g01230 Cma-Chr3:8140438 0 dispersed
Cma18g00896 Cma-Chr18:7744795 Cma03g01230 Cma-Chr3:8140438 0 dispersed
Cma03g01229 Cma-Chr3:8135610 Cma03g01230 Cma-Chr3:8140438 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01230 K10775 - csv:101218144 1332.39