Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01233 ATGGAGATGGGATCAGTCACAGTAAGATTCGAAGAGGAAGAGCTTGAAAATGGTGAATCAGAGAGGAGGAGAAAGAGAGGGAAAAGGAAAGATGCGGAGGATGGAATGGTATTAGATCCAAGGCTGCCCATATTGAACGCATGGAACAGGATTTTTCTGGTGGCTTGTCTGGTTTCACTATTTGTGGACCCTCTCTTCTTCTTCCTGCCCCTTGTCAACACCGAGGACGTCTGCGTCGAAACCAGCCGAGGGCTCGCCGTGGCGCTGACGGTGGTTCGATCCATGGCGGATGTGTTCTACATAACCCACATAGTGGTGAGGTTTAGGACAGCTTATGTAGCTCCCTCCTCCAGGATCTTTGGAAGAGGGGAGCTCGTCAGTCTCCCTTCTAAGATTGCTGCCAACTATCTTGGTTTCGAGTTTTGGCTTCATTTCGCTGCTGCTTTGCCTCTTCCACAGGCATTCATATGGGCTGCAATCCCAAACATGATAAGGGGTTCAAACATGAGCCCATGGAGTTACTTGGTTCGGTTCTCCATTCTATTCCAGTACCTGTTGAGGCTGTATCTCATCTTCCCTCTATCTGAACAAATCATTAAGGCCACGGGAGCTCTGATGAAAACGGCATGGGCTGGAGCTGTCTATAACCTAATGCTCTTCATGCTTGCAAGCCACGTTTTGGGGTCGTGTTGGTACCTTTTATCCATAGGACGACAAATGGAATGCTGGAAAAAGGTTTGCAGTTTGGGGGAGGTGGATTGCGGATATGGGTTCTTTAGTTGTAAGGCTGGCGTGGGAGATCCAAGCAGAAGTGCTTGGTTTGAAGCAACCAATGTTTCAAATCTTTGTCATCCAAGTGCCACCACTTTCTTCCATTTTGGCATCTTTTCTGATTCTTTTGCATCAACTTCTTCCTCCTTTTTCAGTAGGTACTTCTACTGTTTTTGGTGGGGGCTCAGGAATTTAAGCTCTCTAGGACAAAATTTGCTAACAAGTAGCAATGTCGGAGAGATCAATTTCGCCATTGTGATTGCGATTGTGGGCTTGGTTCTTTTCGCTCTTCTTATCGGAAATATGCAAACTTACCTCCAATCGACGACTTTGAGGCTAGAAGAGTGGAGGGTGCGGCGGAGAGACACAGAGCAATGGATGCAGCACAGGCAGCTGCCATACGAACTGAAGCAAAGCGTGAGAAAATACGAGCAATTCAGATGGATGGCAACCCATGGGGTAAACGAAGAAGACATCCTCGAAGGCCTTCCTCTGGACCTCCGACGAGACATCAAGCGCCATCTCTGCCTCGATCTCGTCCGCCAGGTTCCCCTGTTCGACGAAATGGAGGAGAGAATGTTGGACGCTATATGCGAAAGGTTGAGACCCTGTTTAAGCACTTCCAATACCTGCTTGGTCCGGGAAGGCGACCCAGTCAACGAGATGCTGTTTATAATCCGTGGCCATTTGGATTCCCACACCACGAATGGCGGCCGGACTGGATTCTTCAATTCGAGCCGTCTCGGGCCGAGTGACTTCTGTGGCGAGGAGCTACTTCCATGGGCGTTGGACCCTGGAGCAGCCACGGTGCTACCGTCGTCGACTCGCACTGTGAAGGCCGTGACGGAAGTGGAAGGCTTCGCGCTCATTGCGGAGGACTTGAAGTTCGTGGCGGCCCAGTTCCGGATGCTTCACAGTAAGCAGCTTAGGTACACTTTCAGGTTCCACTCGCACCAGTGGCGGACGTGGGCGGCGTGCTTTATACAGGCAGCGTGGTTTAGCTATAAGCGGCGGCGGAAGGAGGGGAAGAAGAATAACATTAATGTTGTTAGGAAGTATGCCGACAACTGTAGGAGGGTTGTCGGAGGTGGTGGTGGTGGTGGTGGTGGCAGTGGCCGATGTTGTGATGGCGGCGAGATGAATATGGTTCATGGGTCGCTGCTGAAGCCACTTGAACCTGATTTCTCGGTGGAACACAGATGA 1974 50.61 MEMGSVTVRFEEEELENGESERRRKRGKRKDAEDGMVLDPRLPILNAWNRIFLVACLVSLFVDPLFFFLPLVNTEDVCVETSRGLAVALTVVRSMADVFYITHIVVRFRTAYVAPSSRIFGRGELVSLPSKIAANYLGFEFWLHFAAALPLPQAFIWAAIPNMIRGSNMSPWSYLVRFSILFQYLLRLYLIFPLSEQIIKATGALMKTAWAGAVYNLMLFMLASHVLGSCWYLLSIGRQMECWKKVCSLGEVDCGYGFFSCKAGVGDPSRSAWFEATNVSNLCHPSATTFFHFGIFSDSFASTSSSFFSRYFYCFWWGLRNLSSLGQNLLTSSNVGEINFAIVIAIVGLVLFALLIGNMQTYLQSTTLRLEEWRVRRRDTEQWMQHRQLPYELKQSVRKYEQFRWMATHGVNEEDILEGLPLDLRRDIKRHLCLDLVRQVPLFDEMEERMLDAICERLRPCLSTSNTCLVREGDPVNEMLFIIRGHLDSHTTNGGRTGFFNSSRLGPSDFCGEELLPWALDPGAATVLPSSTRTVKAVTEVEGFALIAEDLKFVAAQFRMLHSKQLRYTFRFHSHQWRTWAACFIQAAWFSYKRRRKEGKKNNINVVRKYADNCRRVVGGGGGGGGGSGRCCDGGEMNMVHGSLLKPLEPDFSVEHR 657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8164935 8167371 + CmaCh03G012330.1 Cma03g01233 290804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01233 657 MobiDBLite consensus disorder prediction 1 30 - -
Cma03g01233 657 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 30 654 - -
Cma03g01233 657 ProSiteProfiles cAMP/cGMP binding motif profile. 442 527 IPR000595 -
Cma03g01233 657 SMART cnmp_10 442 570 IPR000595 -
Cma03g01233 657 Pfam Ion transport protein 47 369 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cma03g01233 657 CDD CAP_ED 442 573 IPR000595 -
Cma03g01233 657 PANTHER PROTEIN CNGC15A 30 654 - -
Cma03g01233 657 SUPERFAMILY cAMP-binding domain-like 372 564 IPR018490 -
Cma03g01233 657 Gene3D - 56 366 - -
Cma03g01233 657 PRINTS EAG/ELK/ERG potassium channel family signature 104 113 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma03g01233 657 PRINTS EAG/ELK/ERG potassium channel family signature 222 232 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma03g01233 657 PRINTS EAG/ELK/ERG potassium channel family signature 311 328 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma03g01233 657 PRINTS EAG/ELK/ERG potassium channel family signature 337 348 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma03g01233 657 PRINTS EAG/ELK/ERG potassium channel family signature 355 364 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma03g01233 657 PRINTS EAG/ELK/ERG potassium channel family signature 405 412 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma03g01233 657 Gene3D Jelly Rolls 440 560 IPR014710 -
Cma03g01233 657 Gene3D Helix hairpin bin 370 433 - -
Cma03g01233 657 SUPERFAMILY Voltage-gated potassium channels 46 364 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01233 Cma-Chr3:8164935 Cma01g01579 Cma-Chr1:10909946 0 dispersed
Cma02g00901 Cma-Chr2:5361560 Cma03g01233 Cma-Chr3:8164935 0 wgd
Cma20g00493 Cma-Chr20:2405631 Cma03g01233 Cma-Chr3:8164935 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01233 K05391 - csv:101221856 931.784