Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma03g01236 | ATGATTACGTTTATGGATTCGAAAGAGAAATCGAGGGAGATGGAGAAATGTTTAGATCCTCAGCTATGGCATGCCTGTGCGGGAGGAATGGTTCACATGCCGCCGGTGAACGCCAGGGTTTTCTATTTTCCTCAAGGCCATGCCGAACATGCTTGTGCCCCCCCAGTTGATTTCAGGACTTGTCCGAAGCTTCCTTCATATACCCTTTGCAGAGTTTCTGCTATCAATTTCCTTGCGGATCCTGACACCGACGAAGTCTTTGCCAAACTTAGGTTGATACCCATAAATGGAAGTGAACTAGATTTTGATGATGGAATTGGGCGGCTTAATGGGTCTGAACAGGATAAGCCAACTTCGTTTGCAAAGACACTGACTCAGTCTGATGCTAACAATGGAGGGGGTTTCTCTGTTCCAAGGTATTGTGCAGAAACCATCTTCCCTCCGTTGGATTACTCTGCTGATCCGCCGGTTCAGACCATTCTTGCTAAGGATGTTCATGGCGAGACATGGAAATTCAGGCACATTTATAGGGGGACGCCTCGGCGGCATCTTTTGACCACTGGCTGGAGTAGTTTTGTTAACCATAAGAAGCTTGTTGCCGGGGATTCCATTGTGTTCTTGAGAGCTGAAAATGGTGATCTCTGCGTCGGGATTAGGCGGGCGAAGAGGGGAGCTGGAGATGGTCCAGACTCGTCGTGTGGATGGAATGGTGCAGTCCCTTACGGAGCTTTCTCTGCTAATGAAAGTCTTATGGGAAAGGGGAAAGTGAAGGCTGAATCAGTAATTGAAGCTGCTACACTTGCTGCAAATGGGCAGCCCTTCGAAATAGTATTCTACCCAAGAGCTAGCACTCCTGAATTCTGTGTCAAGGCAGCACTGGTGAAAGCAGCGTTGCAGATCCGGTGGTGCTCAGGTATGAGGTTCAAGATGGCCTTCGAAACCGAGGACTCGTCTCGTATTAGCTGGTTCATGGGGACCGTCAATTCGGTTCAGGTCGCTGACCCACTACGCTGGCCAGAGTCACCATGGAGGCTTCTTCTGGTAAACACTGTTCTTTTCTCCTTGTCTGCATTCATTGCTAGTAATCAATGTATTCAGAACATGATGTTTCAGGAATGA | 1119 | 48.35 | MITFMDSKEKSREMEKCLDPQLWHACAGGMVHMPPVNARVFYFPQGHAEHACAPPVDFRTCPKLPSYTLCRVSAINFLADPDTDEVFAKLRLIPINGSELDFDDGIGRLNGSEQDKPTSFAKTLTQSDANNGGGFSVPRYCAETIFPPLDYSADPPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSSFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKRGAGDGPDSSCGWNGAVPYGAFSANESLMGKGKVKAESVIEAATLAANGQPFEIVFYPRASTPEFCVKAALVKAALQIRWCSGMRFKMAFETEDSSRISWFMGTVNSVQVADPLRWPESPWRLLLVNTVLFSLSAFIASNQCIQNMMFQE | 372 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 8185388 | 8186506 | + | CmaCh03G012360.1 | Cma03g01236 | 290807 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma03g01236 | 372 | Pfam | Auxin response factor | 264 | 346 | IPR010525 | GO:0003677|GO:0005634|GO:0006355|GO:0009725 | |
Cma03g01236 | 372 | CDD | B3_DNA | 119 | 220 | IPR003340 | GO:0003677 | |
Cma03g01236 | 372 | SMART | B3_2 | 120 | 222 | IPR003340 | GO:0003677 | |
Cma03g01236 | 372 | Pfam | B3 DNA binding domain | 120 | 221 | IPR003340 | GO:0003677 | |
Cma03g01236 | 372 | PANTHER | AUXIN RESPONSE FACTOR 16 | 10 | 349 | - | - | |
Cma03g01236 | 372 | ProSiteProfiles | B3 DNA-binding domain profile. | 120 | 222 | IPR003340 | GO:0003677 | |
Cma03g01236 | 372 | SUPERFAMILY | DNA-binding pseudobarrel domain | 115 | 222 | IPR015300 | - | |
Cma03g01236 | 372 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 10 | 349 | IPR044835 | GO:0003677|GO:0006355|GO:0009725 | |
Cma03g01236 | 372 | Gene3D | - | 301 | 351 | - | - | |
Cma03g01236 | 372 | Gene3D | - | 118 | 222 | IPR015300 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma03g01236 | Cma-Chr3:8185388 | Cma04g02570 | Cma-Chr4:17655759 | 3.07E-169 | dispersed | |
Cma15g00461 | Cma-Chr15:2049668 | Cma03g01236 | Cma-Chr3:8185388 | 3.00E-157 | wgd | |
Cma02g00897 | Cma-Chr2:5336352 | Cma03g01236 | Cma-Chr3:8185388 | 7.38E-171 | wgd | |
Cma20g00489 | Cma-Chr20:2380923 | Cma03g01236 | Cma-Chr3:8185388 | 5.30E-171 | wgd | |
Cma03g01236 | Cma-Chr3:8185388 | Cma07g00923 | Cma-Chr7:4422962 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34697 | PF02362 | B3 | 2.80E-22 | CL0405 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma03g01236 | - | - | csv:101217039 | 646.736 |