Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01236 ATGATTACGTTTATGGATTCGAAAGAGAAATCGAGGGAGATGGAGAAATGTTTAGATCCTCAGCTATGGCATGCCTGTGCGGGAGGAATGGTTCACATGCCGCCGGTGAACGCCAGGGTTTTCTATTTTCCTCAAGGCCATGCCGAACATGCTTGTGCCCCCCCAGTTGATTTCAGGACTTGTCCGAAGCTTCCTTCATATACCCTTTGCAGAGTTTCTGCTATCAATTTCCTTGCGGATCCTGACACCGACGAAGTCTTTGCCAAACTTAGGTTGATACCCATAAATGGAAGTGAACTAGATTTTGATGATGGAATTGGGCGGCTTAATGGGTCTGAACAGGATAAGCCAACTTCGTTTGCAAAGACACTGACTCAGTCTGATGCTAACAATGGAGGGGGTTTCTCTGTTCCAAGGTATTGTGCAGAAACCATCTTCCCTCCGTTGGATTACTCTGCTGATCCGCCGGTTCAGACCATTCTTGCTAAGGATGTTCATGGCGAGACATGGAAATTCAGGCACATTTATAGGGGGACGCCTCGGCGGCATCTTTTGACCACTGGCTGGAGTAGTTTTGTTAACCATAAGAAGCTTGTTGCCGGGGATTCCATTGTGTTCTTGAGAGCTGAAAATGGTGATCTCTGCGTCGGGATTAGGCGGGCGAAGAGGGGAGCTGGAGATGGTCCAGACTCGTCGTGTGGATGGAATGGTGCAGTCCCTTACGGAGCTTTCTCTGCTAATGAAAGTCTTATGGGAAAGGGGAAAGTGAAGGCTGAATCAGTAATTGAAGCTGCTACACTTGCTGCAAATGGGCAGCCCTTCGAAATAGTATTCTACCCAAGAGCTAGCACTCCTGAATTCTGTGTCAAGGCAGCACTGGTGAAAGCAGCGTTGCAGATCCGGTGGTGCTCAGGTATGAGGTTCAAGATGGCCTTCGAAACCGAGGACTCGTCTCGTATTAGCTGGTTCATGGGGACCGTCAATTCGGTTCAGGTCGCTGACCCACTACGCTGGCCAGAGTCACCATGGAGGCTTCTTCTGGTAAACACTGTTCTTTTCTCCTTGTCTGCATTCATTGCTAGTAATCAATGTATTCAGAACATGATGTTTCAGGAATGA 1119 48.35 MITFMDSKEKSREMEKCLDPQLWHACAGGMVHMPPVNARVFYFPQGHAEHACAPPVDFRTCPKLPSYTLCRVSAINFLADPDTDEVFAKLRLIPINGSELDFDDGIGRLNGSEQDKPTSFAKTLTQSDANNGGGFSVPRYCAETIFPPLDYSADPPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSSFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKRGAGDGPDSSCGWNGAVPYGAFSANESLMGKGKVKAESVIEAATLAANGQPFEIVFYPRASTPEFCVKAALVKAALQIRWCSGMRFKMAFETEDSSRISWFMGTVNSVQVADPLRWPESPWRLLLVNTVLFSLSAFIASNQCIQNMMFQE 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8185388 8186506 + CmaCh03G012360.1 Cma03g01236 290807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01236 372 Pfam Auxin response factor 264 346 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cma03g01236 372 CDD B3_DNA 119 220 IPR003340 GO:0003677
Cma03g01236 372 SMART B3_2 120 222 IPR003340 GO:0003677
Cma03g01236 372 Pfam B3 DNA binding domain 120 221 IPR003340 GO:0003677
Cma03g01236 372 PANTHER AUXIN RESPONSE FACTOR 16 10 349 - -
Cma03g01236 372 ProSiteProfiles B3 DNA-binding domain profile. 120 222 IPR003340 GO:0003677
Cma03g01236 372 SUPERFAMILY DNA-binding pseudobarrel domain 115 222 IPR015300 -
Cma03g01236 372 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 10 349 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cma03g01236 372 Gene3D - 301 351 - -
Cma03g01236 372 Gene3D - 118 222 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01236 Cma-Chr3:8185388 Cma04g02570 Cma-Chr4:17655759 3.07E-169 dispersed
Cma15g00461 Cma-Chr15:2049668 Cma03g01236 Cma-Chr3:8185388 3.00E-157 wgd
Cma02g00897 Cma-Chr2:5336352 Cma03g01236 Cma-Chr3:8185388 7.38E-171 wgd
Cma20g00489 Cma-Chr20:2380923 Cma03g01236 Cma-Chr3:8185388 5.30E-171 wgd
Cma03g01236 Cma-Chr3:8185388 Cma07g00923 Cma-Chr7:4422962 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34697 PF02362 B3 2.80E-22 CL0405 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01236 - - csv:101217039 646.736