Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01239 ATGTCGTCTAACAGTGTGTTTGAGCGCAGAAGCAATGGTGGGTTGGCCGCCACCGCCAAGGACTACCAAGACCCGCCGCCGGCTCCGTTAATCGACGCGAGGGAGTTCACTCAGTGGTCCTTTTACAGAGCTATCACTGTCGAATTCGTCGCCACACTTATGTTCTTGTACATTCTTGTTCTCACTGTGATTGGCTATGACACCCAGTCCGCGACCAATGTCTGCGGCGGCGTCGGCGTTTTGGGCATTGCCTGGGCCGTCGGCGGAATGATCTTCGTTCTCGTTTACTGCACCGCTGGAATTTCAGGAGGGCATATTAACCCGGCGGTGACATTTGGGCTGTTCTTGGCTCAAAAAATCTCCCTAATCAGAGCTGTGTTTTACATTATGGCTCAATGTTTGGGCGCCATTTGTGGGTGTGCGTTGGCTAAATCATTCCAGAAGGCTTATTACGTTCGCTACAGAGGTGGAACCAATATACTCGCCGATGGGTACAGCATCACCACCGGCTTAGGCGCAGAGATCGCCGGAACTTTCATTCTTGTTTACACCGTCTTCTCCGCGACCGACCCCAAGAGAAACGCCAGAGATTCTCACGTCCCTGTTTTGGCGCCACTCCCAATTGGATTCGCGGTGTTTATAGTTCATTTAGCCACCATTCCGATCACCGGTACCGGCATCAACCCAGCTCGAAGCTTTGGAGCTGCAGTGATCTATAACAGAACGGAGGCCTGGGATCATCATTGGATCTTTTGGGTTGGGCCGTTCGTCGGAGCTGCCATTGCCGCAATTTATCATCAAGTCATAATTAGAGCAGGAGCTATTAAAGCTCTTGGATCATTCAGAACTTCCTCCGCCCTATAA 864 51.5 MSSNSVFERRSNGGLAATAKDYQDPPPAPLIDAREFTQWSFYRAITVEFVATLMFLYILVLTVIGYDTQSATNVCGGVGVLGIAWAVGGMIFVLVYCTAGISGGHINPAVTFGLFLAQKISLIRAVFYIMAQCLGAICGCALAKSFQKAYYVRYRGGTNILADGYSITTGLGAEIAGTFILVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFIVHLATIPITGTGINPARSFGAAVIYNRTEAWDHHWIFWVGPFVGAAIAAIYHQVIIRAGAIKALGSFRTSSAL 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8200297 8201533 - CmaCh03G012390.1 Cma03g01239 290810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01239 287 PANTHER PLASMAMEMBRANE INTRINSIC PROTEIN 25 17 283 - -
Cma03g01239 287 TIGRFAM MIP: MIP family channel proteins 48 265 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma03g01239 287 Pfam Major intrinsic protein 36 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma03g01239 287 PRINTS Major intrinsic protein family signature 43 62 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma03g01239 287 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma03g01239 287 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma03g01239 287 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma03g01239 287 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma03g01239 287 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma03g01239 287 SUPERFAMILY Aquaporin-like 34 271 IPR023271 -
Cma03g01239 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 17 283 IPR034294 -
Cma03g01239 287 CDD MIP 43 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma03g01239 287 Gene3D Glycerol uptake facilitator protein. 28 287 IPR023271 -
Cma03g01239 287 ProSitePatterns MIP family signature. 105 113 IPR022357 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01239 Cma-Chr3:8200297 Cma07g00928 Cma-Chr7:4452094 4.46E-159 dispersed
Cma03g01239 Cma-Chr3:8200297 Cma03g01240 Cma-Chr3:8202908 4.08E-165 tandem
Cma02g00891 Cma-Chr2:5289215 Cma03g01239 Cma-Chr3:8200297 1.65E-158 wgd
Cma20g00484 Cma-Chr20:2339049 Cma03g01239 Cma-Chr3:8200297 9.90E-160 wgd
Cma03g01239 Cma-Chr3:8200297 Cma07g00926 Cma-Chr7:4445014 1.29E-171 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01239 K09872 - oeu:111378025 459.144