Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01240 ATGTCTAAGGATCTCGAAGCCGGTGGGTTCGCTACCAAGGACTACCAAGACCCACCACCAGCACCATTGATCGACGCCGACGAGTTCACTCAATGGTCTTTTTACAGAGCCATCATCGCCGAGTTCGTCGCCACGCTTTTGTTCTTGTACGTCACTGTTCTCACTGTCATTGGCTACAGTAACCAGTCCGACACCAAAAACGGCGGCCAAATCTGCGGCGGGGTCGGCATTCTTGGCATCGCTTGGGCATTCGGCGGCATGATTTTCGTCCTCGTTTACTGTACCGCTGGAATTTCCGGAGGGCACATTAACCCGGCGGTGACTTTTGGGTTGTTTTTGGCTCGGAAAGTGTCTTTGGTTAGAGCAATTCTTTACATGGCGGCTCAATGTTTGGGCGCCATTTGTGGGTGTGCTTTAGTGAAATCGTTCCAGAAGGCTCATTACAATGAGTACGGCGGTGGAGCCAATTCACTCGCCGATGGGTACAGCACCGGCACCGGCTTAGCCGCAGAGATCATCGGAACTTTCGTTCTTGTTTACACCGTCTTCTCCGCCACCGATCCCAAGAGGAACGCCAGAGATTCTCACGTTCCTGTTTTGGCGCCACTCCCAATTGGGTTCGCGGTGTTTATGGTTCATTTGGCCACCATTCCGATCACCGGGACCGGCATCAACCCAGCTCGAAGCTTTGGAGCCGCCGTGATCTTAAACAAAGACAAGCCATGGGATGACCAGTGGATCTTTTGGGTTGGCCCCTTCATTGGAGCTGCCATTGCTGCAATTTATCACCAAATCATACTGAGAGCAGGGGCAGTTAAAGCTCTGGGATCGTTCAGAAGTTCCACCGCCGTTTAA 855 52.51 MSKDLEAGGFATKDYQDPPPAPLIDADEFTQWSFYRAIIAEFVATLLFLYVTVLTVIGYSNQSDTKNGGQICGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAILYMAAQCLGAICGCALVKSFQKAHYNEYGGGANSLADGYSTGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVILNKDKPWDDQWIFWVGPFIGAAIAAIYHQIILRAGAVKALGSFRSSTAV 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8202908 8204373 - CmaCh03G012400.1 Cma03g01240 290811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01240 284 SUPERFAMILY Aquaporin-like 28 268 IPR023271 -
Cma03g01240 284 CDD MIP 36 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma03g01240 284 TIGRFAM MIP: MIP family channel proteins 40 262 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma03g01240 284 ProSitePatterns MIP family signature. 102 110 IPR022357 -
Cma03g01240 284 Pfam Major intrinsic protein 29 263 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma03g01240 284 Gene3D Glycerol uptake facilitator protein. 21 284 IPR023271 -
Cma03g01240 284 PRINTS Major intrinsic protein family signature 36 55 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma03g01240 284 PRINTS Major intrinsic protein family signature 84 108 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma03g01240 284 PRINTS Major intrinsic protein family signature 121 140 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma03g01240 284 PRINTS Major intrinsic protein family signature 170 188 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma03g01240 284 PRINTS Major intrinsic protein family signature 206 228 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma03g01240 284 PRINTS Major intrinsic protein family signature 246 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma03g01240 284 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 8 281 IPR034294 -
Cma03g01240 284 PANTHER AQUAPORIN PIP2-4-RELATED 8 281 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00891 Cma-Chr2:5289215 Cma03g01240 Cma-Chr3:8202908 1.14E-173 dispersed
Cma03g01240 Cma-Chr3:8202908 Cma07g00928 Cma-Chr7:4452094 0 dispersed
Cma03g01242 Cma-Chr3:8216153 Cma03g01240 Cma-Chr3:8202908 1.15E-92 dispersed
Cma19g00744 Cma-Chr19:7425701 Cma03g01240 Cma-Chr3:8202908 5.32E-155 dispersed
Cma03g01239 Cma-Chr3:8200297 Cma03g01240 Cma-Chr3:8202908 4.08E-165 tandem
Cma03g01240 Cma-Chr3:8202908 Cma03g01241 Cma-Chr3:8206142 0 tandem
Cma15g00457 Cma-Chr15:2035913 Cma03g01240 Cma-Chr3:8202908 5.30E-08 wgd
Cma18g00891 Cma-Chr18:7695873 Cma03g01240 Cma-Chr3:8202908 2.41E-159 wgd
Cma03g01240 Cma-Chr3:8202908 Cma06g00375 Cma-Chr6:1736779 3.50E-149 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01240 K09872 - csv:101215366 540.036