Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01241 ATGGAAAGGAAAACAATAGATGGCTTTGAACCAGGTCCACTTCCTTCGCCCAGGCAAGTAGACAGGTTTGGATTCTTAAAGCAGGAACACAATAGTTCTCCAGATGCTATAACCAAAATCAGGTCCACCCATGTACAGGAGAGGGAGGAAAGGAGAGTTAGAAAATGGAGGAAGATGATTGGAATTGGAGGTAGCGACTGGAAGCATTATGTTAGGAGAAAACCTCATGTTGTTAAAAGGCGTATAAGGAAAGGTATTCCTGATTGTTTAAGGGGTCTAGTTTGGCAGCTGATTTCTGGAAGTCGAGACTTACTGTTGATGAACCCTGGAGTTTATGAGCAATTAGTAATATATGAGACATCAGCTTCTGAATTGGATATTATTCGAGATATCTCTCGTACCTTTCCTTCACATGTTTTCTTCCAACAGAGACATGGACCTGGTCAGAGATCTCTCTACAATGTTTTAAAGGCATATTCAGTTTTTGATCGGAATGTCGGATATGTTCAGGGGATGGGATTTTTAGCTGGTTTGTTGCTTCTCTATATGAGTGAAGAGGATGCATTCTGGCTGTTGGTCGCATTACTTAAAGGTGCAGTTCATGCTCCTATGGAAGGATTGTATCTGGCGGGGCTTCCTCTAGTGCAGCAGTACCTATTTCAATTTGATAACCTTGTGAGAGAGCAGCTGCCCAAGCTTGGAGAGCATTTTACACAGGAAATGATAAATCCTAGCATGTACGCGAGCCAATGGTTTATTACCGTTTTCTCTTACTCTTTCCCCTTCCATTTGGCTCTACGAATTTGGGATGTCTTTCTTTATGAGGGTGTTACGATTGTTTTTAAAGTTGGTTTGGCTCTTCTAAAATATTGCCATGATGACTTGGTAAAGTTGCCCTTTGAAAAACTCATACATGCTTTGCGAAACTTCCCAGAAGATGCAATGGATCCAGATACATTATTGCCCATGGCTTACTCAATTAAAGTGTCCAAGCAGCTGGAGGAATCGAAACATCTGTATGAAACGAAGCATGGGAAGGAGATTCAGGGTGATGCTGAAACTAGTGGGAAACAGGAGCAGGAGAAAGGAAACGACAAGAAGCGAAGAAGCGCCGCCCGCTGCCTCATGTCGAAGGATATTGAAGCCGGAGGGCGTGGTGGGTTTAGCGGCAAGGATTACCAAGACCCGCCGGCAGCGCCATTGATCGACGCACAGGAGTTTGCTCAGTGGTCATTTTACAGAGCCATTATAGCCGAGTTTGTTGCTACCCTTTTGTTCTTGTATGTCACGGTTCTCACTGTCATTGGGTATAAAGTTCAGAGTGATGTTGACAATGGAGGCCAGATTTGCGGCGGCGTAGGCATTTTGGGCATCGCTTGGGCCTTCGGCGGCATGATTTTTGTACTCGTTTACTGCACCGCCGGTATTTCCGGGGGACACATAAATCCGGCGGTGACATTTGGGCTGTTCTTGGCTCGGAAGGTGTCGTTGGTGAGAGCCGTATTATACATGGCGGCGCAGAGTTTGGGCGCCATTTGTGGGTGTGCGTTAGTGAAGGCATTTCAAAACGGCCACTACAATGAGTACGGCGGTGGAGCCAATTCGCTCGCCGACGGTTACAGCACCGGCACCGGATTAGCCGCCGAGATCATCGGAACCTTCGTTCTCGTTTACACTGTGTTTTCCGCCACCGACCCGAAGAGAAATGCCAGAGACTCCCATGTTCCGGTTTTGGCGCCACTCCCAATTGGGTTAGCGGTGTTCATGGTTCACTTAGCCACGATTCCGATCACCGGCACCGGTATCAACCCAGCTAGAAGCTTCGGAGCTGCAGTGGTGTTCAACAAATCCAAGCCATGGGATGATCAATGGATGTTTTGGGTCGGACCCTTCATCGGAGCTGCCATTGCTGCAATTTACCATCAGTTCATATTAAGAGCAAGCGCCGGCAAGGCTCTGGGATCATTCACAAGCTCCTGA 1980 47.12 MERKTIDGFEPGPLPSPRQVDRFGFLKQEHNSSPDAITKIRSTHVQEREERRVRKWRKMIGIGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQLVIYETSASELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVFDRNVGYVQGMGFLAGLLLLYMSEEDAFWLLVALLKGAVHAPMEGLYLAGLPLVQQYLFQFDNLVREQLPKLGEHFTQEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLYEGVTIVFKVGLALLKYCHDDLVKLPFEKLIHALRNFPEDAMDPDTLLPMAYSIKVSKQLEESKHLYETKHGKEIQGDAETSGKQEQEKGNDKKRRSAARCLMSKDIEAGGRGGFSGKDYQDPPAAPLIDAQEFAQWSFYRAIIAEFVATLLFLYVTVLTVIGYKVQSDVDNGGQICGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVLYMAAQSLGAICGCALVKAFQNGHYNEYGGGANSLADGYSTGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGLAVFMVHLATIPITGTGINPARSFGAAVVFNKSKPWDDQWMFWVGPFIGAAIAAIYHQFILRASAGKALGSFTSS 659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8206142 8214865 - CmaCh03G012410.1 Cma03g01241 290812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01241 659 TIGRFAM MIP: MIP family channel proteins 418 640 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma03g01241 659 Gene3D - 202 350 - -
Cma03g01241 659 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 67 236 IPR035969 -
Cma03g01241 659 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 111 197 - -
Cma03g01241 659 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 2 346 - -
Cma03g01241 659 PRINTS Major intrinsic protein family signature 548 566 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma03g01241 659 PRINTS Major intrinsic protein family signature 584 606 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma03g01241 659 PRINTS Major intrinsic protein family signature 462 486 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma03g01241 659 PRINTS Major intrinsic protein family signature 624 644 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma03g01241 659 PRINTS Major intrinsic protein family signature 499 518 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma03g01241 659 PRINTS Major intrinsic protein family signature 414 433 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma03g01241 659 Gene3D - 49 101 - -
Cma03g01241 659 Pfam Major intrinsic protein 407 641 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma03g01241 659 CDD MIP 414 644 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma03g01241 659 SMART tbc_4 82 299 IPR000195 -
Cma03g01241 659 SUPERFAMILY Aquaporin-like 406 646 IPR023271 -
Cma03g01241 659 Pfam Rab-GTPase-TBC domain 88 295 IPR000195 -
Cma03g01241 659 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 211 330 IPR035969 -
Cma03g01241 659 ProSiteProfiles TBC/rab GAP domain profile. 85 276 IPR000195 -
Cma03g01241 659 ProSitePatterns MIP family signature. 480 488 IPR022357 -
Cma03g01241 659 Gene3D Glycerol uptake facilitator protein. 399 659 IPR023271 -
Cma03g01241 659 PANTHER RAB-GTPASE-TBC DOMAIN-CONTAINING PROTEIN-RELATED 2 346 - -
Cma03g01241 659 MobiDBLite consensus disorder prediction 344 370 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01241 Cma-Chr3:8206142 Cma07g00929 Cma-Chr7:4453457 0 dispersed
Cma06g00375 Cma-Chr6:1736779 Cma03g01241 Cma-Chr3:8206142 4.00E-144 dispersed
Cma15g00457 Cma-Chr15:2035913 Cma03g01241 Cma-Chr3:8206142 3.63E-09 dispersed
Cma18g00891 Cma-Chr18:7695873 Cma03g01241 Cma-Chr3:8206142 8.98E-150 dispersed
Cma20g00661 Cma-Chr20:3044575 Cma03g01241 Cma-Chr3:8206142 3.00E-34 dispersed
Cma03g01240 Cma-Chr3:8202908 Cma03g01241 Cma-Chr3:8206142 0 tandem
Cma03g01241 Cma-Chr3:8206142 Cma03g01242 Cma-Chr3:8216153 1.83E-83 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01241 K20242 - csv:101215120 683.33