Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01242 ATGGGGCGGAAGGTTTCGTTGGTCAGAGCTGTACTGTACATAGTGGCTCAGTGTTTGGGAGCCATTTGTGGGTGTGGGCTGGTGAAGTCATTAAAGAAGGCTAACTTTAATGACCTCGGCGGTGGAGCCACCGAGCTCGCCGACGGTTTCAGTCCCGGCGCCGGCCTGGCCGCCGAGATCATCGGAACCTTCGTTCTTGTATACACCATCTTCTCTGCCACCGATCCGAAGAGAAAAGCCAGAGATTCCCACGTTCCTGTTCTAGCGCCGCTGCCAATTGGGTTTGCCATGTTCGTGGTGAATTTGGCCACTATTCCGGTCACCGGCGCCAGCATTAACCCAGCTCGAAGCTTCGGCTCTGCAGTGATGTTCAACAAACACAAAGCTTGGGATAACCACTGGATATTCTGGGCCGGACCTTTCACCGGAACTGCAATGGCTGCAATTTACCATGAATTTGTTCTGAGAGGAGGAGCTGCGAAGACCTTGAGATCCTTCCGGAGTTCCTCAATTTAA 516 53.1 MGRKVSLVRAVLYIVAQCLGAICGCGLVKSLKKANFNDLGGGATELADGFSPGAGLAAEIIGTFVLVYTIFSATDPKRKARDSHVPVLAPLPIGFAMFVVNLATIPVTGASINPARSFGSAVMFNKHKAWDNHWIFWAGPFTGTAMAAIYHEFVLRGGAAKTLRSFRSSSI 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8216153 8216824 + CmaCh03G012420.1 Cma03g01242 290813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01242 171 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 2 169 IPR034294 -
Cma03g01242 171 Pfam Major intrinsic protein 2 151 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma03g01242 171 Gene3D Glycerol uptake facilitator protein. 1 171 IPR023271 -
Cma03g01242 171 PANTHER AQUAPORIN PIP2-1 2 169 - -
Cma03g01242 171 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 25 - -
Cma03g01242 171 SUPERFAMILY Aquaporin-like 2 156 IPR023271 -
Cma03g01242 171 PRINTS Major intrinsic protein family signature 9 28 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma03g01242 171 PRINTS Major intrinsic protein family signature 58 76 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma03g01242 171 PRINTS Major intrinsic protein family signature 94 116 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma03g01242 171 PRINTS Major intrinsic protein family signature 134 154 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01242 Cma-Chr3:8216153 Cma03g01240 Cma-Chr3:8202908 1.15E-92 dispersed
Cma03g01241 Cma-Chr3:8206142 Cma03g01242 Cma-Chr3:8216153 1.83E-83 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01242 K09872 - csv:101215842 318.161