Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma03g01242 | ATGGGGCGGAAGGTTTCGTTGGTCAGAGCTGTACTGTACATAGTGGCTCAGTGTTTGGGAGCCATTTGTGGGTGTGGGCTGGTGAAGTCATTAAAGAAGGCTAACTTTAATGACCTCGGCGGTGGAGCCACCGAGCTCGCCGACGGTTTCAGTCCCGGCGCCGGCCTGGCCGCCGAGATCATCGGAACCTTCGTTCTTGTATACACCATCTTCTCTGCCACCGATCCGAAGAGAAAAGCCAGAGATTCCCACGTTCCTGTTCTAGCGCCGCTGCCAATTGGGTTTGCCATGTTCGTGGTGAATTTGGCCACTATTCCGGTCACCGGCGCCAGCATTAACCCAGCTCGAAGCTTCGGCTCTGCAGTGATGTTCAACAAACACAAAGCTTGGGATAACCACTGGATATTCTGGGCCGGACCTTTCACCGGAACTGCAATGGCTGCAATTTACCATGAATTTGTTCTGAGAGGAGGAGCTGCGAAGACCTTGAGATCCTTCCGGAGTTCCTCAATTTAA | 516 | 53.1 | MGRKVSLVRAVLYIVAQCLGAICGCGLVKSLKKANFNDLGGGATELADGFSPGAGLAAEIIGTFVLVYTIFSATDPKRKARDSHVPVLAPLPIGFAMFVVNLATIPVTGASINPARSFGSAVMFNKHKAWDNHWIFWAGPFTGTAMAAIYHEFVLRGGAAKTLRSFRSSSI | 171 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 8216153 | 8216824 | + | CmaCh03G012420.1 | Cma03g01242 | 290813 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma03g01242 | 171 | PANTHER | AQUAPORIN OR AQUAGLYCEROPORIN RELATED | 2 | 169 | IPR034294 | - | |
Cma03g01242 | 171 | Pfam | Major intrinsic protein | 2 | 151 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma03g01242 | 171 | Gene3D | Glycerol uptake facilitator protein. | 1 | 171 | IPR023271 | - | |
Cma03g01242 | 171 | PANTHER | AQUAPORIN PIP2-1 | 2 | 169 | - | - | |
Cma03g01242 | 171 | ProSiteProfiles | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 25 | - | - | |
Cma03g01242 | 171 | SUPERFAMILY | Aquaporin-like | 2 | 156 | IPR023271 | - | |
Cma03g01242 | 171 | PRINTS | Major intrinsic protein family signature | 9 | 28 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma03g01242 | 171 | PRINTS | Major intrinsic protein family signature | 58 | 76 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma03g01242 | 171 | PRINTS | Major intrinsic protein family signature | 94 | 116 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma03g01242 | 171 | PRINTS | Major intrinsic protein family signature | 134 | 154 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma03g01242 | Cma-Chr3:8216153 | Cma03g01240 | Cma-Chr3:8202908 | 1.15E-92 | dispersed | |
Cma03g01241 | Cma-Chr3:8206142 | Cma03g01242 | Cma-Chr3:8216153 | 1.83E-83 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma03g01242 | K09872 | - | csv:101215842 | 318.161 |