Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01247 ATGTCTCCTGTGGGCTCAAAATTTGCTTTTCTTCTATTGTCGGAGCTCCTCCTTTTCAATTTAGATACAGGAAAAAGCCACCAATTGATAGTAAACTACTATAATGAGACGTGTCCAAGAGCGGAACACATAATCAAACAACAAGTTTTCTCCTTATACAAAAAACATGGAAACTCAGCCATTTCATGGATTAGAAACCTCTTCCATGATTGCATGGTGAAGTCCTGTGATGCATCTCTTTTGTTGGAGATCAAAGAGGAAGAAGGTGGAACTGTGTCAGAGATGAAGTCGTCAAGGAGCTTTGGGATTAGAAATCTCAAATATGTTAATCAAATCAAACAGCTTCTTGAAAATGAGTGTCCCGACACTGTCTCTTGTGCTGATATTATGGCTCTTGCTGCAAGAGATGCCATTGTCCTGATAGGGGGATTAGAGATGGAGATGAAAACAGGGAGGAGAGATAGCAGAGAAAGCTATGAAGGAGTAGTGGAAGAGTTCATTCCAAATCATAATGATTCTCTTTCGTTGGTTCTTTCTAGGTTTCAAGATATTGGCATTGATGCTCAAGCTACCGTTGCTCTTTTAGGAGCTCACTCAGTGGGTCGGGTCCACTGCGTAAATCTAGTGAACCGGCTCTACCCGACAGTCGATCCGACTTTGGATCCGGATCATGGAGAATATCTAAAAAGAAGGTGCCCGAGCCCGAACCCGGACCCGAAGGCAGTTTTGTACGCAAGAAACGATTTGGAAACTCCGATGGTGCTGGACAACAACTACTATAAGAACGTATTGGGCCAGAAGGCCCTTTTGTTGGTGGACCAACAATTGGGCTTTAGCCCAATAACTCTTCCTTACGTCCAGCAGATGGCCTCCAATAACACTTACTTTCTGGCCCAATTTGCTATGGCTGTGCTCTTGCTGTCAGAGAACGCCCCTCTCACTGACGGAGGAGGAGAAATTAGAAAGGATTGTCGACGTGTCAACAAGTGA 990 44.14 MSPVGSKFAFLLLSELLLFNLDTGKSHQLIVNYYNETCPRAEHIIKQQVFSLYKKHGNSAISWIRNLFHDCMVKSCDASLLLEIKEEEGGTVSEMKSSRSFGIRNLKYVNQIKQLLENECPDTVSCADIMALAARDAIVLIGGLEMEMKTGRRDSRESYEGVVEEFIPNHNDSLSLVLSRFQDIGIDAQATVALLGAHSVGRVHCVNLVNRLYPTVDPTLDPDHGEYLKRRCPSPNPDPKAVLYARNDLETPMVLDNNYYKNVLGQKALLLVDQQLGFSPITLPYVQQMASNNTYFLAQFAMAVLLLSENAPLTDGGGEIRKDCRRVNK 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8234595 8236523 + CmaCh03G012470.1 Cma03g01247 290818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01247 329 PRINTS Plant peroxidase signature 142 157 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma03g01247 329 PRINTS Plant peroxidase signature 104 117 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma03g01247 329 PRINTS Plant peroxidase signature 262 279 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma03g01247 329 PRINTS Plant peroxidase signature 62 82 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma03g01247 329 PRINTS Plant peroxidase signature 246 261 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma03g01247 329 PRINTS Plant peroxidase signature 123 133 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma03g01247 329 PRINTS Plant peroxidase signature 38 57 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma03g01247 329 PRINTS Plant peroxidase signature 189 201 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma03g01247 329 CDD secretory_peroxidase 28 327 IPR033905 GO:0004601|GO:0042744
Cma03g01247 329 SUPERFAMILY Heme-dependent peroxidases 28 328 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cma03g01247 329 Gene3D Peroxidase, domain 2 168 307 - -
Cma03g01247 329 Pfam Peroxidase 46 292 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma03g01247 329 PRINTS Haem peroxidase superfamily signature 60 74 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma03g01247 329 PRINTS Haem peroxidase superfamily signature 124 141 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma03g01247 329 PRINTS Haem peroxidase superfamily signature 142 154 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma03g01247 329 PRINTS Haem peroxidase superfamily signature 190 205 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma03g01247 329 PRINTS Haem peroxidase superfamily signature 248 263 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma03g01247 329 PANTHER PEROXIDASE 25-RELATED 16 326 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma03g01247 329 Gene3D - 32 328 - -
Cma03g01247 329 PANTHER PEROXIDASE 21 16 326 - -
Cma03g01247 329 ProSiteProfiles Plant heme peroxidase family profile. 28 328 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g01247 Cma13g00738 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01247 Cma-Chr3:8234595 Cma13g00738 Cma-Chr13:6528604 1.91E-127 dispersed
Cma14g00201 Cma-Chr14:864110 Cma03g01247 Cma-Chr3:8234595 1.05E-115 wgd
Cma03g01247 Cma-Chr3:8234595 Cma06g00369 Cma-Chr6:1709568 9.33E-148 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01247 K00430 - csv:101221151 544.658