Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01267 ATGGACGAAGAGGCTAATTCTTGGCTTAGGAGAACCAAGTTTTCTCACACAGTTTATCATCGATGGGACTCATTAAGATTGAACCCTGTTCCTTTCATCGTCGAACCACCGCCTCGGAATTACGGCTTGAAATCGAGGCCTCAATCAGCTTCATCCGCCCAGAAACCAAATCCTGATATCTCAAAGATTCAGCGAAATTTCATAGCCAACAAACAGAGGTCTCTGTCTCCTCTTCCCGAGAGCAACCTCTCTCAAGTTTTCAAGGAAGCAAAATCCGCCAGTAAGAGATTCTCGACTCCAACGCCTCGACTTAGAGAACGAACTAGGGAATTCAAGAACAAGCTATTCAACAAGGACCCGCAAGATTCAAAATCGTCCAATTCCAAGACATCGTCGAATACCAGTCCCCTGAAACTCCTAGCTTCGGCCAAAGGGGGTGAAAAGTCAAAGTTCCGGAAGGACTCTTCGTGGACCAAATATTTCGATTCCGGTGGCGGAAAAGTCACTGCGGTCGAAACAGCCGACGACTGGAGCGTTGATCTATCCAAGCTGTTTGTTGGGTTAAGGTTCGCTCATGGAGCTCACAGTCGTCTTTATCATGGAAAATACAACGATGAACCTGTTGCTGTTAAACTCATTAGAGTGCCTGAGGACGACGATAGTGGAGCGCTTGCTTCTCGATTGGAGAAGCAATTCACCAGAGAAGTAACCCTTTTATCTCGTCTCCACCATCCTAATGTTTTAAAGTTTGTAGCAGCCTGTAGGAACCCACCAGTTTACTGTGTCATTACTGAATATTTGTCTCAAGGATCATTAAGGGCGTACTTGCTCAAACTCGAGCGCCAATCTCTCCCTTTGCAGAAACTAATTGAGTTCTCTTTAGATGTGGGTCGTGGCATGGAATACATTCATTCCCAAGGCATAATTCATCGGGATCTCAAGCCTGAGAATGTTCTAATTGATGAGGACTTCCACCTGAAAATTGCAGATTTTGGGATAGCTTGTCCTGAGGCCTTTTTTGACCCATTAGCCGATGATCCCGGAACGTATCGGTGGATGGCACCGGAGATGATCAAACATAAACCCTATGGTCGAAAAGTTGATGTATACAGCTTTGGGCTTATGTTGTGGGAAATGGTGTCTGGTGCAATTCCTTACGAGGATATGACTCCCATTCAAGCAGCCTTTGCTGTTGTGAATAAGAATCTGAGGCCTGTTATCTCGAGCGACTGTCCGTTGGCAATGCGAGCTTTGATCGAGCAATGTTGGTCTGTGCAACCGGACAAGAGACCTGATTTCTGGCAGATTGTGAAGGTATTAGAGCAATTCGAAGCTTCGCTTGCCCGTGATGGGACACTGAGTTTAACGGGGAACCCGCGGTCGAGTTTCCAAGACCATAAGAAAGGGCTGCTCCATTGGATTCAAAAGCTTGGCCCTGGCCCCCTGCATCCTGAAACCTCATCCTCCTCGCCCGTGCCGAAACCGAAATTCTCGTAA 1497 46.89 MDEEANSWLRRTKFSHTVYHRWDSLRLNPVPFIVEPPPRNYGLKSRPQSASSAQKPNPDISKIQRNFIANKQRSLSPLPESNLSQVFKEAKSASKRFSTPTPRLRERTREFKNKLFNKDPQDSKSSNSKTSSNTSPLKLLASAKGGEKSKFRKDSSWTKYFDSGGGKVTAVETADDWSVDLSKLFVGLRFAHGAHSRLYHGKYNDEPVAVKLIRVPEDDDSGALASRLEKQFTREVTLLSRLHHPNVLKFVAACRNPPVYCVITEYLSQGSLRAYLLKLERQSLPLQKLIEFSLDVGRGMEYIHSQGIIHRDLKPENVLIDEDFHLKIADFGIACPEAFFDPLADDPGTYRWMAPEMIKHKPYGRKVDVYSFGLMLWEMVSGAIPYEDMTPIQAAFAVVNKNLRPVISSDCPLAMRALIEQCWSVQPDKRPDFWQIVKVLEQFEASLARDGTLSLTGNPRSSFQDHKKGLLHWIQKLGPGPLHPETSSSSPVPKPKFS 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8307182 8309402 - CmaCh03G012670.1 Cma03g01267 290838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01267 498 MobiDBLite consensus disorder prediction 38 60 - -
Cma03g01267 498 Pfam Protein tyrosine and serine/threonine kinase 191 440 IPR001245 GO:0004672|GO:0006468
Cma03g01267 498 SMART serkin_6 184 443 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g01267 498 Gene3D Transferase(Phosphotransferase) domain 1 269 469 - -
Cma03g01267 498 MobiDBLite consensus disorder prediction 482 498 - -
Cma03g01267 498 MobiDBLite consensus disorder prediction 100 119 - -
Cma03g01267 498 ProSiteProfiles Protein kinase domain profile. 184 444 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g01267 498 SUPERFAMILY Protein kinase-like (PK-like) 170 440 IPR011009 -
Cma03g01267 498 CDD STKc_MAP3K-like 191 440 - -
Cma03g01267 498 MobiDBLite consensus disorder prediction 44 60 - -
Cma03g01267 498 MobiDBLite consensus disorder prediction 479 498 - -
Cma03g01267 498 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 3 468 - -
Cma03g01267 498 MobiDBLite consensus disorder prediction 89 145 - -
Cma03g01267 498 MobiDBLite consensus disorder prediction 120 139 - -
Cma03g01267 498 ProSitePatterns Serine/Threonine protein kinases active-site signature. 308 320 IPR008271 GO:0004672|GO:0006468
Cma03g01267 498 PRINTS Tyrosine kinase catalytic domain signature 264 277 IPR001245 GO:0004672|GO:0006468
Cma03g01267 498 PRINTS Tyrosine kinase catalytic domain signature 302 320 IPR001245 GO:0004672|GO:0006468
Cma03g01267 498 PRINTS Tyrosine kinase catalytic domain signature 348 358 IPR001245 GO:0004672|GO:0006468
Cma03g01267 498 PRINTS Tyrosine kinase catalytic domain signature 367 389 IPR001245 GO:0004672|GO:0006468
Cma03g01267 498 PRINTS Tyrosine kinase catalytic domain signature 411 433 IPR001245 GO:0004672|GO:0006468
Cma03g01267 498 PANTHER TYROSINE KINASE FAMILY PROTEIN 3 468 - -
Cma03g01267 498 Gene3D Phosphorylase Kinase; domain 1 172 268 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01267 Cma-Chr3:8307182 Cma07g00340 Cma-Chr7:1466430 5.67E-113 dispersed
Cma13g00640 Cma-Chr13:6076993 Cma03g01267 Cma-Chr3:8307182 0 wgd
Cma18g00374 Cma-Chr18:2041128 Cma03g01267 Cma-Chr3:8307182 0 wgd
Cma03g01267 Cma-Chr3:8307182 Cma07g00240 Cma-Chr7:1094237 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68440 PF07714 PK_Tyr_Ser-Thr 3.10E-58 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01267 - - cmax:111478573 971.844