Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01273 ATGGACGATGACAACCACCACCACGATCTGGCTCCACTCTCCTCCGCCACTCTCTCCGCCGCCACCATTCTCCTCTCTCCTCCTCCTCCTCCTCCACAAGACTCCCATCTCCCACCTATTCTCTCGCAACACTGCTTAGGCTTCTCCTCCCCCGCCCCAAAATCCTATTTTTTCACAAACCCTCCTCCGCCTCTTCACGACCAACTCCCTTCCCATTTCCCGCCTTCCTCCGCCTTCCTCTCCCACGGCTTCAACGATCTCACAACTTCTTTGCTCCAGAAAGACGAAGGCAGAAGGGTTCTTGATGCTTGGAGTACCAAAGTGGCTAGGAGTAAGAGAAGACTCGCCCGCCAAAGAACCCTTACTTTAAGTCGAATCTCTTCTTCCTCCTCCTCCTCCTCCGCCTCCTCTTCCGGTTTTGGTTATAATAACGATGAGTATTCAAAGGGATTAATGGCTACCCACTTCCTAAACACCGATACACATAACAACGCCAATCCGAATAATTTTACCCTCTGCACCCCAGATAACAAGATTCTGAGAATGCTGCTGAAGAAGGACCTGAAGAACAGCGATGTGGGGTCTTTGGGCAGGATCGTCCTCCCCAAGAGGGAGGCAGAAGAGAATCTACCATTGCTCACAGATAAGGAAGGCATCCAAATTGTGATGAGAGAGGTCCACTCAAACAAAAAATGGGCCATGAAATACAAGTACTGGGCAAACAACAGAAGTAGAATGTATGTGCTGGAAAACACAGGTGATTTTGTTAGACAGAATGGTCTGAAGATGGGAGATTTAATGACCCTTTACGAGGATGAATGCAAGAACATGTACGTGGCGGTTGTGAAAGGTGAGAATGATTCAAGAAGGGAAGAAAACGAGGAGATGGTGAGGAACAACGACAAGAACAACAAGAAGAACAACCAGCCGTGTTCTTTCACAAACATGTGCATTAAAGATGAAGAAGAGGACGCCTCTTTAGCTATGTTAATCGAAGAGCTCAAACACAAGCCAGAAGACGAGGACCGCCCGCTGTCCTGCAGCACCAGCACTAGCAGCAGCAACAGCAGCAGCAACAATAACAACAACGCCGTCATGGCTTCGGATTCATATTTGAGCACTACTCAACAACAGCCATCCTCCTCCAATATGATGGGAGCTGCTGCTGCAAAAGGGATTCATAATAGTAATAATAATAAGAAGAAGAAGAATGGGAGTAAGGAAGGGGGGGAGGATTTGCAGGCGGTGAATGGGTTGGAAGATTGCTTTAGAGGGCTTGATACTCTGCCGGAAGTTAGTGGATTCAAGTTCCCTCTTTTCGACTATTTGAGCAATGACAGAACGTGA 1347 47.96 MDDDNHHHDLAPLSSATLSAATILLSPPPPPPQDSHLPPILSQHCLGFSSPAPKSYFFTNPPPPLHDQLPSHFPPSSAFLSHGFNDLTTSLLQKDEGRRVLDAWSTKVARSKRRLARQRTLTLSRISSSSSSSSASSSGFGYNNDEYSKGLMATHFLNTDTHNNANPNNFTLCTPDNKILRMLLKKDLKNSDVGSLGRIVLPKREAEENLPLLTDKEGIQIVMREVHSNKKWAMKYKYWANNRSRMYVLENTGDFVRQNGLKMGDLMTLYEDECKNMYVAVVKGENDSRREENEEMVRNNDKNNKKNNQPCSFTNMCIKDEEEDASLAMLIEELKHKPEDEDRPLSCSTSTSSSNSSSNNNNNAVMASDSYLSTTQQQPSSSNMMGAAAAKGIHNSNNNKKKKNGSKEGGEDLQAVNGLEDCFRGLDTLPEVSGFKFPLFDYLSNDRT 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8317256 8320096 - CmaCh03G012730.1 Cma03g01273 290844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01273 448 SUPERFAMILY DNA-binding pseudobarrel domain 184 281 IPR015300 -
Cma03g01273 448 MobiDBLite consensus disorder prediction 115 140 - -
Cma03g01273 448 MobiDBLite consensus disorder prediction 345 385 - -
Cma03g01273 448 MobiDBLite consensus disorder prediction 286 302 - -
Cma03g01273 448 CDD B3_DNA 183 279 IPR003340 GO:0003677
Cma03g01273 448 Pfam B3 DNA binding domain 186 282 IPR003340 GO:0003677
Cma03g01273 448 MobiDBLite consensus disorder prediction 286 311 - -
Cma03g01273 448 Coils Coil 289 309 - -
Cma03g01273 448 ProSiteProfiles B3 DNA-binding domain profile. 184 285 IPR003340 GO:0003677
Cma03g01273 448 SMART B3_2 184 285 IPR003340 GO:0003677
Cma03g01273 448 MobiDBLite consensus disorder prediction 120 140 - -
Cma03g01273 448 Gene3D - 173 294 IPR015300 -
Cma03g01273 448 MobiDBLite consensus disorder prediction 335 412 - -
Cma03g01273 448 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR LEC2 ISOFORM X1 66 437 - -
Cma03g01273 448 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 66 437 IPR044800 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01273 Cma-Chr3:8317256 Cma08g00060 Cma-Chr8:349224 1.23E-34 dispersed
Cma03g01273 Cma-Chr3:8317256 Cma07g00235 Cma-Chr7:1082795 1.76E-112 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34700 PF02362 B3 1.50E-15 CL0405 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01273 - - cpep:111804135 752.281