Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01278 ATGGCTCGTAATCTCAGACTCCATGCACTCATAGTGCTTCTGCTTCTCGTCTCCTTCTGGACTCCATCGTGTTCGGAGTCAATTCCAACTCCTAATTCCCAATGCCAAACTCAGCTCCAACAAGGCTGCCATGACAGACCCAAGTCCCTCGAACTCAAGCTCATCGCCATCGCAACCATTTTAGTTGCGAGCATGATCGGCGTTTGTCTTCCCCTGTTCTCCCGCGCGGTACCGCTGCTTCAACCAGAGGGAAACCCCTTCGCAATCGTTAAGGCATTTGCCTCCGGCGTGATTTTAGCCACTGGGTATATGCACGTTTTGCCCGATTCGTTCAATTGCTTGACATCCCCTTGTTTGCCGGAGAACCCATGGCGGAAATTCCCTTTCACCACATTCATAGCCATGATTTCGGCTGTGATGACTTTAATGTTGGACTCGTTTTCGATGAGTCGATACAAGAAAGAGTTGATGGAGGCTGAAGCTGCAGAAGAAAAACAGAACGAGGGCATGGAAATCGATGACAACTTGGGGAGAGAAGAAGGAACCGATAAAAAACTTGGTCCGAAATTGGTACGACACCGTGTTATTGCGCAATTATTAGAAGCAGGGATCGTCGTGCATTCGGTGGTGATAGGGCTTTCAATGGGGGCTTCGGAAAATCCGTGCACCATAAGGCCGCTCATCGCTGCTCTCTGCTTCCATCAGCTGTTTGAAGGGATGGGGCTTGGAGGGTGCATTCTGCAAGCAGAATACGGGTTGAAGATGAAAGCAATCATGGTGTTGTTCTTCTCGATCACGACGCCATTTGGAATAGCATTGGGGATTGGGTTGTCGAATGTGTATAGTGATAATAGTCCCACGGCTCTTATAGTTGTGGGGATTTTGAATGCTTTATCTGCTGGGTTGCTGAATTATATGGCATTGGTTGATTTGTTGGCGTATGATTTCATGGGGCAGAAGTTGCAAGCCAATCTCACGCTTCATATATCGGCTTACGTTGCGGTTTTTCTGGGCGCTGGAGGCATGTCTTTAATGGCAAAATGGGCTTAG 1050 48.38 MARNLRLHALIVLLLLVSFWTPSCSESIPTPNSQCQTQLQQGCHDRPKSLELKLIAIATILVASMIGVCLPLFSRAVPLLQPEGNPFAIVKAFASGVILATGYMHVLPDSFNCLTSPCLPENPWRKFPFTTFIAMISAVMTLMLDSFSMSRYKKELMEAEAAEEKQNEGMEIDDNLGREEGTDKKLGPKLVRHRVIAQLLEAGIVVHSVVIGLSMGASENPCTIRPLIAALCFHQLFEGMGLGGCILQAEYGLKMKAIMVLFFSITTPFGIALGIGLSNVYSDNSPTALIVVGILNALSAGLLNYMALVDLLAYDFMGQKLQANLTLHISAYVAVFLGAGGMSLMAKWA 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8336845 8337894 - CmaCh03G012780.1 Cma03g01278 290849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01278 349 Coils Coil 149 169 - -
Cma03g01278 349 TIGRFAM zip: ZIP zinc/iron transport family 35 349 IPR004698 GO:0005385|GO:0016021|GO:0071577
Cma03g01278 349 PANTHER ZINC TRANSPORTER 7 32 349 - -
Cma03g01278 349 Pfam ZIP Zinc transporter 51 346 IPR003689 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Cma03g01278 349 PANTHER ZINC/IRON TRANSPORTER 32 349 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01278 Cma-Chr3:8336845 Cma13g00436 Cma-Chr13:4933094 3.10E-136 dispersed
Cma03g01278 Cma-Chr3:8336845 Cma18g00546 Cma-Chr18:3514491 1.42E-137 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01278 K14709 - csv:101204028 519.235