Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01289 ATGGAGTCCCACGTCCTCTCACGCGCCACTTCCTTCGCCGGCGGCATTTCCAGTCTCCGCAAGTTGCATAGGGAGACCACCACCAACAACCATATCGCCTTCGTTCAAACCAGGCCGATCGTCGAGGGAGCTAACTTGATTTGGGGACGACAACTACGGCCGTCTCTACTTCTCGACAACCTCTCGACGCCGAATCTATCCTCGGCCAAACGGGAGACGCTTCGGCCTACTTTTGCGGCAGCCTCCTCTTCTTCCGCCGGAGGCAGCGATTCCGCTGGGGAAGCGAAGGTTGCTCCAGTGGGTTTCTTTGAGAAGTATCCGGCGTTGGTCACCGGATTCTTCTTCTTCATGTGGTACTTTTTGAACGTGATTTTCAATATCCTCAACAAGAAGATATATAATTACTTCCCCTATCCATATTTTGTGTCGGTGATCCATTTGCTCGTCGGAGTGGTGTACTGTTTGATAAGCTGGGCTGTCGGTCTTCCTAAGCGAGCACCTATTGACTCAACCCTTCTGAAGTTGCTGATCCCTGTAGCTTTCTGTCATGCACTCGGCCATGTCACTAGCAATGTCTCATTTGCAGCTGTAGCTGTCTCATTCACACACACAGTCAAAGCTCTGGAACCGTTCTTTAACGCCGCCGCTTCTCAATTCATTTTGGGGCAATCCATTCCCATTACCTTGTGGCTTTCATTGGCTCCCGTTGTCATTGGTGTGTCAATGGCGTCCTTGACTGAGCTTTCATTTAACTGGACTGGCTTCATTAGTGCTATGATTTCCAATATCTCCTTTACCTACAGAAGTCTTTACTCAAAGAAAGCCATGACTGACATGGACAGCACCAACGTCTATGCCTATATTTCCATCATTGCTCTCCTTTTCTGCATTCCACCTGCTGTAATTTTAGCAACCAACACCCTGGAGAGGGTGGCACCACTCACCCACGCAGTCGGCAATGTGCTGAAACGTGTATTTGTGATCGGATTCTCCATCATTGTCTTTGGCAACAAAATTTCAACCCAGACTGGTATTGGAACCAGCATTGCCATTGCAGGAGTGGCGCTTTACTCGTACATCAAGGCTAAGATGGAAGAAGAGAAACGACTTTCTTTTGTGGACAGCGAACAAAGGTGGCTTGAAGAAGCAGAGCAGCAGCAGCTTGGGGATGAGGGGAGGATTTGGTGTCCAATGAGAGACGAAGCAGCGAGGTTGGCGGGTAAAGGGGCCGAAGAAGGTTTGCCTGTTCTCTTCCTTCGATCTTCATCTTCCAATTCCATGGAAGCTGCTGCCTCGGACGGCGAAAATCACAACCACAATAATGATGATATTAACAAAATTAGCAACTCAAGGGAGGGTCTTAGCAAGCCCAAGCGCCAGATGAAGACTCCCTTCCAGCTTGAAACCCTCGAGAAGGCCTATGCTTTGGACACGTACCCATCAGAGTCGACAAGGGCTGAACTGTCGGAGAAATTGGGGCTTACCGATCGGCAATTGCAGATGTGGTTTTGTCACAGGAGGTTGAAGGACAAGAAGGAACCAGCGAAGAAACCCCGGAAGGTGATGGCACCGGCGTTGCCTGATTCTCCCATTGATGAATTGAGAGTAGTGGCCGAGCCGGGTAGTGATTACGCTTCGGGCTCGGGCTCGGGTTCGAGTCCATTTGGTGATGTTGGGTTGCGTAATGTGGTACCTAGAAGTGTTGGAGATGATATGCCAATGATGAGAAGGTATTATGAACCTTCACGGTCTGTTATGGAACTTAGAGCTATTGCTTGCGTCGAATCGCAGTTAGGAGAGCCATTGAGGGAGGACGGACCTATTCTTGGGATTGAATTTGATTCATTACCACCTGATGCTTTCGGAGCACCTATAGTGGCAGAGCAGCAGAAGCGATCTGGCCATTCGTATGGGGAAAAATACGAACAACGGGATGCTAAATCAAATAAAGTGACTGCAAGGGGATTCACAGAATATCCATTTATGCCAGACCAATCTAATATTAGAGCTGATGCCTATGGTCCAGTTGCCCAATCACATTATCCAGATTCATTAGTTGAGGTTACATCAGCCAGGACACCGTATTTTCTTGGTCATGAACAGCCGAACAGGAGCCACAATTACCATGGTCAGGTCTCAAGGGTTCGTCTTCTGTCTCAACAGGAGAAACAGGCAGTTACAATTCCATCTCCTGCTGAAGATAGCACGTGTGTCCCTCCAAGGGATTCTTTTGCAAGTATCAGAATGAATTCTCAGTTTACTGAACACCCAATTGTTGGACAAGAAAATTATGTGTTGGCTGATGGGCATATTTTTCCAGAGGACGTCATGATTAGGATGGAAAGGAAACGCAAGAGTGAAGAAGCTCGTTTAAACAAAGAAGCTGAAGCCCATGAAATAAAAATGCGGAAAGAGCTTGAGAAACAAGATATTTTGAGGAAAAAGAGTGAAGAACGAATGAGGAGAGAAATGGAAAGGCAAGATCGCGAAAGGAGGAGAGAAGAGGAAAAGTTACTGCGAGAAAAGCAGCGGGAAGAGGAGAGATTGAAGCGTGAGGAAAGACGTGAACATGAACGGAAGGAGAAGTTTCTGCAGAGGGAGTATTTAAGGGCTGAAAAGAGGAGGCAAAAAGAAGCTATTCGCAAAGAAAAGGAAGCAGTGAGACGCCAAGCTGCTATTGAGAAGGCTACTGCTCGTAGGATTGCCCGTGAGTCTATGGAGCTTATTGAGGATGAACAACTTGAACTGATGGAGCTGGCTGCTGCAAATAAAGGATTCTCCTCCATATTAAGTCTTGATCATGACACTTTGCAGAATCTTGAATCATTCCAAGATTATCTAGGTGCTTTTCCACCCAAGTCTGTGCAATTGAAAAAACCTTTCGGCATTCAGCCTTGGATCAATTCAGAGGAGAACATTGGCAACCTTCTCATGGTATGGAGATTTTTCATTACATTCTCTGATGTTCTTGAGCTATGGCCCTTTACCCTTGACGAGTTTGTGCAAGCTCTTCATGACTATGATTCAAGATTACTGGGTGAGATTCACATTTGTCTTCTGAGTCTGATTGTAAAAGATATCGAAGATGTTGCAAGAACACCTTCTGCTGGATTGGGAATAAACCAGAATGGTGTTGCCAACTCGGGAGGTGGACATCCTCAGATTGTCGAAGGGGCATATGCGTGGGGATTTGACATTTGCAACTGGCAGAAACATTTAAACCCATTAACATGGCCAGAAATATTTAGACAACTAGCACTATCAGCTGGATTTGGACCTCAGTTGAAGAAGAGGGGTTTGGCATGGTCTGAAATGCGTAGCAACGATGAGGCTAAATGTGGTGAGGATGTAGTTTCTACTCTCCGCAATGGTTCAGCAGCTGAAAATGCATTTGCTATCATGCAAGAGAAAGGTTTGCTAGCTCCTCGGAGATCTAGGCATCGGCTAACTCCTGGAACTGTCAAATTTGCTGCATTTCATGTCCTTTCACTAGAAGGAAGTGAGGGGTTAACAGTACTAGAACTTGCTGAGAAGATACAGAGATCTGGACTTAGAGATCTGTCTACAAGCAAGACACCAGAGGCTTCCATTTCTGTTGCTTTGACAAGGGATACGAAGCTTTTTGAAAGAATTGCTCCTTCCACATATCGTGTGCGAGCTCCTTATAGGAAGGATCCAGATGATGCCGAGGAAATACTTTCAGTAGCCAGAAAGAAAATTCAGGTATTCCAAAATGGGTTTTTGGTTGGAGAAGATGCAGATGATGTTGAAAGAGACGAAGAATCTGAATGTGATGATGTTGATGAAGATCCTGAAGTTGATGATATGGCGACAACAGCTTTGGTGAATGAAGATGTTAGCAAAGGAGATGCTAACTTAGGAGTTGACAATGAGAATGTATGCCATGATATTGCTGGAAATCTACAAAATGCAGTTGCCAAAGATATACCGTCGTTCCCCTTAAGTGGCTCCAAGGACACAAAATATTTAAACATACCCACAGCGCAGTATGCTGCCATTGATGAGACTAATATTAGTGATCTTGATCAAGACAATATGGAGATTGATGAAAGCAAGGAAGGTGAATCATGGATTCAAGGACTTACAGAAGGTGAATATCATGATCTTAGTGTTGAGGAGCGCTTGAATGCCCTTATTGCCTTGACCAGCATTGCAAATGAAGGAAACTCTATTCGCCTTGTTCTTGAGGATCGTTTGGAGGCTGCCAATGCTGTTAAGAAGCAAATGTTGGCAGAGGCTCAGATTGATAAATCTCGTCTAAAAGAAGAGATCATTACTAAATCTGATTTTCCAATTCACATTGTGAGCAAGGTGGAAACTGAACACAATGGTTCCGCTATGGAGGGTGGGCAAAGCCCTTTTCCTGTTACCGAAAAGAAGAACGATGAAACAACCCCAAGCACTGTAGAAATCCTTGGTAATGTCTCTAATGAGAGGGCTACTTCAGTGCCGGATCTTTTCCCAGGCTCAGATAACTTTTTGGCTCAGCAATGTGGACATGCTTCAAAGAGGTCACGTTCACAGTTAAAATCTTATATTGCCCACAAAGCTGAAGAAATGTACACATACAGATCTTTGCCTCTTGGTCGAGATCGTAGGCATAATCGATACTGGCAATTTGTTGCGTCCTCTTCAAGCAATGATCCTGGTTCTGGTAGAATCTTTGTTGAAATGTATGATGGAAAGTGGAGGCTTATTGATTCTGAAGAGGACTTTGATGCTCTTTCAATGGCTTTGGACACACGCGGGGTTAGAGAATCACACCTACGCATAATGTTGCAAATGATAGAGACGTCATTTAAGGAAAATGTTCGAAGGAGTCCGCAGTGTGCCAACGTGATGGTTCAAAGTGGAATTGCACCTAAACATGAAAACGATGAATTGAGTTCTAGTCCTGATTGCAACACTGGTTTTAACAGCCCTGGCAGTACCGTTTGCGGTTTAAATTTGGATACAGTGGTAACATCATCTTCATTCAGAATTGAGCTTGGGAGACATGAAAACGAAAAGAAGGCTGCATTTAGAAGGTATCAAGACTTGCAAAGGTGGATGTTAAGAGAGTGCTTTAGCACATCAACATTATGTGCCATGAAATTTGGAGAAAAAAGGTGCATATCGCTGCTGGACATTTGTGATTCTTGTCTGTGCTTGTTTGAGTCCCAACATTCTCACTGTCCTTCGTGCCATCAAACTTTTGGCACTAGTGAGAATGATATTAATTTTCTCGAACATAAACGTCACTGTGAGATGGAAAGGATGTCTAACCCTTTGGATGTACACATGTTGGATGCATCTCTTCCCCTCAAAAGTAGGTTGCTCAAGGCCCTCTTAGCTTTCATTGAGGTACATGTTCCGTTAGAAGCTTTTCAATCGTTCTGGACAGAGCACAGGAAAGATTGGGGTGTCAGGATGAAATTATCACCATCTATTGAGGAGCTTCTACAGATATTAACCCTGTTTGAAAGTGCGGTTAAGCGAGACTTTCTAAAATCAGACTTTACTACAACAGACGAGCACCGGGGCTCATGTTCCGTCTCTGGGACTGTTATGCATGACCCATCCGATATTGGGTCTGTTCCTACATTACCCTGGATTCCACGGACTAGTGCAGCTGTTGCTTTAAGGCTTTGTGAGGTAGATGCATCAATTTATTACATCGGGTGTGAGAAACCAGAGCCTGACCAGGACAAGGAAGTCGGAGAACATATGAACTTTTCCAACAGATATGTCCAGGTTAAGAATGAGGAGCGGACTAAACTAAACGACTTGGATTATGATGATCTAATGAAGAACGAAAACTCAGCCAATCCCAAAGGTTTTAGGACCAGCTACAAACGCAGTCGAGGGAGTCGAGATTATGGACGCCGCAAAAAGTGGCAGAAAAAAGTTAACGGATCTAGATCTGGCCAAGTCCGGCAAAATGTCAAGAGTAACGAGAAGATGAATCAAGGACAGAGGGAGCTGGGACAAGGAACGCAAGTTATGGGCATACGGGGCCGCCGTACGGTGAGGAAGAGACGGGCTGAGAAGAGCATTCCAGATGACGGACTGCTGGGGCTAATGCCTGGTAGTAGTACTCATAACATAGATGAATCCCCAAAAGATTATCTTGGGGAATGGGAGGATGAAAAAATGGATAGATTCATGGATATGGAAGATGAAGAGGAGAATGTGATGGAGGATAAAGAGAACGTTATGGAAGATGAAGAGAATGAAGAGAATGTGAACAACAACGTAGAAGCAATGGAGTCGGAAGAGGATGGGCAGGGAGTTGTTGGGTACGAGGAAGGGGGTTGGGAATTTGGGTTTGAAGGCACCTCCAACTCCAATAGTAGATGGAACAATGGTGATTTAGAGATGGGTAGCGATGAGGACGTGGATTTATCAGAGGATTACAATGGCACTGAAGAGGGGGGAAACGATGATATAGAGGAGGAGTTAGATGTTGATGATACCAGCGAGGAGTCGGATTGTTCACCAAATAGGAGGATAGTAGGCAACAACAATGGTGGTGCAGAATCCGCTGTTTCAGACGACGACTATAGTGAGTGA 6573 45.08 MESHVLSRATSFAGGISSLRKLHRETTTNNHIAFVQTRPIVEGANLIWGRQLRPSLLLDNLSTPNLSSAKRETLRPTFAAASSSSAGGSDSAGEAKVAPVGFFEKYPALVTGFFFFMWYFLNVIFNILNKKIYNYFPYPYFVSVIHLLVGVVYCLISWAVGLPKRAPIDSTLLKLLIPVAFCHALGHVTSNVSFAAVAVSFTHTVKALEPFFNAAASQFILGQSIPITLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSLYSKKAMTDMDSTNVYAYISIIALLFCIPPAVILATNTLERVAPLTHAVGNVLKRVFVIGFSIIVFGNKISTQTGIGTSIAIAGVALYSYIKAKMEEEKRLSFVDSEQRWLEEAEQQQLGDEGRIWCPMRDEAARLAGKGAEEGLPVLFLRSSSSNSMEAAASDGENHNHNNDDINKISNSREGLSKPKRQMKTPFQLETLEKAYALDTYPSESTRAELSEKLGLTDRQLQMWFCHRRLKDKKEPAKKPRKVMAPALPDSPIDELRVVAEPGSDYASGSGSGSSPFGDVGLRNVVPRSVGDDMPMMRRYYEPSRSVMELRAIACVESQLGEPLREDGPILGIEFDSLPPDAFGAPIVAEQQKRSGHSYGEKYEQRDAKSNKVTARGFTEYPFMPDQSNIRADAYGPVAQSHYPDSLVEVTSARTPYFLGHEQPNRSHNYHGQVSRVRLLSQQEKQAVTIPSPAEDSTCVPPRDSFASIRMNSQFTEHPIVGQENYVLADGHIFPEDVMIRMERKRKSEEARLNKEAEAHEIKMRKELEKQDILRKKSEERMRREMERQDRERRREEEKLLREKQREEERLKREERREHERKEKFLQREYLRAEKRRQKEAIRKEKEAVRRQAAIEKATARRIARESMELIEDEQLELMELAAANKGFSSILSLDHDTLQNLESFQDYLGAFPPKSVQLKKPFGIQPWINSEENIGNLLMVWRFFITFSDVLELWPFTLDEFVQALHDYDSRLLGEIHICLLSLIVKDIEDVARTPSAGLGINQNGVANSGGGHPQIVEGAYAWGFDICNWQKHLNPLTWPEIFRQLALSAGFGPQLKKRGLAWSEMRSNDEAKCGEDVVSTLRNGSAAENAFAIMQEKGLLAPRRSRHRLTPGTVKFAAFHVLSLEGSEGLTVLELAEKIQRSGLRDLSTSKTPEASISVALTRDTKLFERIAPSTYRVRAPYRKDPDDAEEILSVARKKIQVFQNGFLVGEDADDVERDEESECDDVDEDPEVDDMATTALVNEDVSKGDANLGVDNENVCHDIAGNLQNAVAKDIPSFPLSGSKDTKYLNIPTAQYAAIDETNISDLDQDNMEIDESKEGESWIQGLTEGEYHDLSVEERLNALIALTSIANEGNSIRLVLEDRLEAANAVKKQMLAEAQIDKSRLKEEIITKSDFPIHIVSKVETEHNGSAMEGGQSPFPVTEKKNDETTPSTVEILGNVSNERATSVPDLFPGSDNFLAQQCGHASKRSRSQLKSYIAHKAEEMYTYRSLPLGRDRRHNRYWQFVASSSSNDPGSGRIFVEMYDGKWRLIDSEEDFDALSMALDTRGVRESHLRIMLQMIETSFKENVRRSPQCANVMVQSGIAPKHENDELSSSPDCNTGFNSPGSTVCGLNLDTVVTSSSFRIELGRHENEKKAAFRRYQDLQRWMLRECFSTSTLCAMKFGEKRCISLLDICDSCLCLFESQHSHCPSCHQTFGTSENDINFLEHKRHCEMERMSNPLDVHMLDASLPLKSRLLKALLAFIEVHVPLEAFQSFWTEHRKDWGVRMKLSPSIEELLQILTLFESAVKRDFLKSDFTTTDEHRGSCSVSGTVMHDPSDIGSVPTLPWIPRTSAAVALRLCEVDASIYYIGCEKPEPDQDKEVGEHMNFSNRYVQVKNEERTKLNDLDYDDLMKNENSANPKGFRTSYKRSRGSRDYGRRKKWQKKVNGSRSGQVRQNVKSNEKMNQGQRELGQGTQVMGIRGRRTVRKRRAEKSIPDDGLLGLMPGSSTHNIDESPKDYLGEWEDEKMDRFMDMEDEEENVMEDKENVMEDEENEENVNNNVEAMESEEDGQGVVGYEEGGWEFGFEGTSNSNSRWNNGDLEMGSDEDVDLSEDYNGTEEGGNDDIEEELDVDDTSEESDCSPNRRIVGNNNGGAESAVSDDDYSE 2190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8369310 8388010 - CmaCh03G012890.1 Cma03g01289 290860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01289 2190 ProSiteProfiles DDT domain profile. 970 1029 IPR018501 -
Cma03g01289 2190 Coils Coil 2058 2092 - -
Cma03g01289 2190 Coils Coil 813 890 - -
Cma03g01289 2190 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1531 1601 IPR028941 -
Cma03g01289 2190 Pfam Triose-phosphate Transporter family 110 303 IPR004853 -
Cma03g01289 2190 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 1360 1400 IPR028942 -
Cma03g01289 2190 SUPERFAMILY Multidrug resistance efflux transporter EmrE 153 246 - -
Cma03g01289 2190 MobiDBLite consensus disorder prediction 2061 2087 - -
Cma03g01289 2190 Pfam DDT domain 971 1026 IPR018501 -
Cma03g01289 2190 MobiDBLite consensus disorder prediction 2110 2124 - -
Cma03g01289 2190 ProSiteProfiles HARE-type HTH domain profile. 1152 1221 IPR007759 GO:0006355
Cma03g01289 2190 Coils Coil 777 808 - -
Cma03g01289 2190 ProSiteProfiles 'Homeobox' domain profile. 453 513 IPR001356 GO:0003677
Cma03g01289 2190 MobiDBLite consensus disorder prediction 2061 2190 - -
Cma03g01289 2190 MobiDBLite consensus disorder prediction 1449 1470 - -
Cma03g01289 2190 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 430 2184 IPR044977 GO:0006357
Cma03g01289 2190 MobiDBLite consensus disorder prediction 629 649 - -
Cma03g01289 2190 CDD homeodomain 458 513 IPR001356 GO:0003677
Cma03g01289 2190 Gene3D - 455 513 - -
Cma03g01289 2190 SMART testlast3 970 1029 IPR018501 -
Cma03g01289 2190 Pfam Homeodomain 456 512 IPR001356 GO:0003677
Cma03g01289 2190 MobiDBLite consensus disorder prediction 2020 2041 - -
Cma03g01289 2190 MobiDBLite consensus disorder prediction 633 649 - -
Cma03g01289 2190 MobiDBLite consensus disorder prediction 1935 1997 - -
Cma03g01289 2190 SMART HOX_1 455 517 IPR001356 GO:0003677
Cma03g01289 2190 Pfam HB1, ASXL, restriction endonuclease HTH domain 1152 1220 IPR007759 GO:0006355
Cma03g01289 2190 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT1 430 2184 - -
Cma03g01289 2190 SUPERFAMILY Homeodomain-like 448 513 IPR009057 -
Cma03g01289 2190 MobiDBLite consensus disorder prediction 427 458 - -
Cma03g01289 2190 MobiDBLite consensus disorder prediction 807 856 - -
Cma03g01289 2190 MobiDBLite consensus disorder prediction 2127 2161 - -
Cma03g01289 2190 MobiDBLite consensus disorder prediction 2166 2182 - -
Cma03g01289 2190 Coils Coil 1410 1430 - -
Cma03g01289 2190 MobiDBLite consensus disorder prediction 1971 1997 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g01289 Cma07g00218 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01289 Cma-Chr3:8369310 Cma18g01109 Cma-Chr18:9049595 2.02E-150 dispersed
Cma20g00107 Cma-Chr20:488866 Cma03g01289 Cma-Chr3:8369310 2.74E-13 dispersed
Cma07g00219 Cma-Chr7:1016570 Cma03g01289 Cma-Chr3:8369310 0 transposed
Cma07g01284 Cma-Chr7:7234337 Cma03g01289 Cma-Chr3:8369310 3.14E-07 transposed
Cma09g01134 Cma-Chr9:6365680 Cma03g01289 Cma-Chr3:8369310 1.09E-67 transposed
Cma19g00894 Cma-Chr19:8168618 Cma03g01289 Cma-Chr3:8369310 0 transposed
Cma20g01025 Cma-Chr20:7446359 Cma03g01289 Cma-Chr3:8369310 1.51E-06 transposed
Cma03g01289 Cma-Chr3:8369310 Cma07g00218 Cma-Chr7:1012179 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34703 PF03151 TPT 3.20E-73 CL0184 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01289 - - cmo:103484497 2845.07