Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01291 ATGCCTTCACGTCCCCTCCTGTTCCTCCTCTGTTTCCCTCTGTTTTCCTTCGCTCTCAACCAAGAGGGTCGAATTCTCCTTGACTTTAAGCGCTCCGTCGACGCTCATAACAATGCCCTCTCCTCCTGGCACGACGCCGACCCGGACCCCTGTTCTTGGTACGGCATCATCTGCGATGTAGATCATCACGTCATTTCCCTCGACCTCCCCAGCTCCGGAATTTCTGCCCCTTTTCCTGTTCATCTCTGTAACCTTCCGCTTCTCCTCTACGTTTCTCTTTACAATAATAGCTTCCATTCCCTTCTTCCGCCGGACCTCGTCAACTGTACAAATCTCGAGTATCTCGACCTGGGTCAAAATCTCTTAACCGGTTCTCTGCCTCCCTCCCTAGCTGATATGCCTAATCTCCGTTACTTGGATTTGTCCGGCAACAATTTGTCTGGCGAAATACCACCCACCTTCGCTCGGTTTCAGAAACTTGAGGCGTTTTCCCTTATTTTGAATCTTATGGGTGGTGTGATCCCTCCGTTTCTTGGGAACATAACCACCCTTAGGATGTTGAATCTATCTTACAACAGTTTTGAGCCGGGAAGAATCCCGCCGGAGCTGGGTAATCTAGTGAATCTTGAGGTTCTTTGGTTGACGGGTTGTAACTTACAGGGGGAGATTCCCGACTCGCTGGGACGGCTCAAGAATCTCGTTCTTCTTGATTTGAGCATTAACAATCTTTCTGGGTCGTTCCCCCCAGCGCTGACGGAGTTAACCCACATGTCCCAGATTGAGTTGTTTAGCAATTCCTTGTCCGGTGCGCTACCAGATGGGCTTTCGAAACTCAAGTCGTTGCGGTTGGTCGATATTTCGATGAATAAGTTCTCTGGGCCTATTCCGGGCGACTTGTTTGAGTTGCCGCTCGAAAGCCTTAATGCGTTTGAGAATAAGTTCGAGGGTAGCTTGCCGGAAAGCATGGGGAGGTCGAGGACTTTGACAGAGGTCAAGCTATTTTCAAACAGATTCACAGGGGCGATACCACAACATTTGGGGAAATATTCGCCTCTGGAATCGTTGGACATTTCCAACAACTTCTTTTCCGGCCGGCTTCCCGAGGCCTTATGTGAGAATGGAAAACTGTTGGAAATAATGATGATCAACAATTTCATTTCCGGCGAACTCCCGTCCAGTCTCGGTGATTGCCACTCCCTAACCAGGATTCGATTAGGGAGCAACAATCTTACGGGTCATGTACCTGAAAATTTATGGGGACTTCCAGGTGTTGTTCTGCTTGAACTTGCATACAACAGCTTCTCTGGTCCAATCTCTAAGAACATAGCCAATTCCAAGCGGCTGAGTTTGCTTCTTATTTCTAACAACAAATTCTCAGGAACAATTCCAGAGGAGTTTGGGTCTTTGGAGAATCTGGTAGAGTTCGCCGGTGAGAATAACAAGTTCGTAGGGAATTTCCCTGAGAGCCTCACGAAAATACATACGCTTGCCAAGTTAAATCTTAAAAACAACATGCTTTCGGGGTTGATCAGCAGCAGGCTTGATGCCTGGAAGAGGCTAAATGAGCTGAATCTGGCTAATAATAACTTCTCTGGGCAAATTCCCCGGGAAATTGCTAACTTGCCTGTGCTTAATTACCTCGATCTTTCAGGCAATCAATTTTCAGGGGAAATCCCATATGGGTTACAGAATACGAACCTCAATGTTCTTAATCTATCATACAACCACTTAAATGGGACGCTTCCTTCCTATTTCGAGAGTGAAGTGTATAGAAATAGCTTTCTTGGTAATCCTGATTTGTGTAGGGATGGAAGTGGAGCGTGTCGTCCAATTAAATCTAGAAGAGGAGGAGGAGGAGGAGGAGATTGCGATGGGGATGGAGTTTGCATTTGGATGATGCGATCCGTTTTTGTATCAGCAGGTGTAATTTTCTTTGTGGGAATGGCTTTCTTCCACGTCAAGTACAAGAAATTCCTCGCCTCAAGAAGTCTAAACATGAAATCGAAATGGACAATGACATCGTTTCAAAAGCTGTCTTTTAGCCAGGACGAGATTGTGGGTTCCTTGGATGAACACATCGTGATAGGCAGTGGCGGCTCTGGCCAAGTTTACAAGGTTGCTCTCACCAATGGTTCCACCATTGCTGTTAAGAAGCTTTGGCCCGAGGTGTCGAACAACCGCAAGAGCTTCGATCTCGAGAAAGTTTGGAGTGAAGATGTTTTTGATGCAGAAGTCGAGATTTTGGGTAACATCAGACATAAAAACATAGTGAAACTATTGTGTTGTTGTAGCAATGGAGTCAGCAAGCTTTTGGTGTATGAATACATGCCTAATGGAAGCTTAGGTGATATGCTTCATGACAGTAGAAGTGCGTTATTGGATTGGCCAACAAGATACAAGATAGCCTTGGATGTTGCTGAGGGGCTGTCTTATCTTCATCATGATTGTGTTCCTCCAATCGTACACAGAGATATCAAGTCTAATAACATCTTGTTGGATGCTGATTTCGGAGCTATGATAGCAGATTTTGGAATAGCTATGGCTGTCGACGTATCCGAGGTTAAATCGATGTCGGTGGTTACTGGTTCTTATGGTTATATTGCTCCAGAGTATGCTTATTCATCGAAAGTGAACGAAAAGGGTGACATATTTAGCTACGGGATGGTGATCCTTGAGCTGATAACAGGGCGGCGGCCAACTGACCCCGAGTTCGAAGAAAACGGTCTAGTGAAATGGGTATGCAACAGTTTAGAAAAGGAAGGCATGAAGCATATTGTAGACCCCAAATTGGATTGGTGTTGCATGGAGGAAATGTTGAAGGTCCTCAACATTGGGCTCCAATGCAGCAGCCCTCAACCTGTGTACCGCCCAGCCATGCGGCGAGTGGTTAAGCTGTTGGAAGAAGTTCGTATGGATAGCCACCCGATGAATGGAGGGAGAGAGGGAAGATTGAAGGCATATTGTTTGGATGACGTTTCAGATAGTGAAAATGTGGTATAG 3000 46.07 MPSRPLLFLLCFPLFSFALNQEGRILLDFKRSVDAHNNALSSWHDADPDPCSWYGIICDVDHHVISLDLPSSGISAPFPVHLCNLPLLLYVSLYNNSFHSLLPPDLVNCTNLEYLDLGQNLLTGSLPPSLADMPNLRYLDLSGNNLSGEIPPTFARFQKLEAFSLILNLMGGVIPPFLGNITTLRMLNLSYNSFEPGRIPPELGNLVNLEVLWLTGCNLQGEIPDSLGRLKNLVLLDLSINNLSGSFPPALTELTHMSQIELFSNSLSGALPDGLSKLKSLRLVDISMNKFSGPIPGDLFELPLESLNAFENKFEGSLPESMGRSRTLTEVKLFSNRFTGAIPQHLGKYSPLESLDISNNFFSGRLPEALCENGKLLEIMMINNFISGELPSSLGDCHSLTRIRLGSNNLTGHVPENLWGLPGVVLLELAYNSFSGPISKNIANSKRLSLLLISNNKFSGTIPEEFGSLENLVEFAGENNKFVGNFPESLTKIHTLAKLNLKNNMLSGLISSRLDAWKRLNELNLANNNFSGQIPREIANLPVLNYLDLSGNQFSGEIPYGLQNTNLNVLNLSYNHLNGTLPSYFESEVYRNSFLGNPDLCRDGSGACRPIKSRRGGGGGGDCDGDGVCIWMMRSVFVSAGVIFFVGMAFFHVKYKKFLASRSLNMKSKWTMTSFQKLSFSQDEIVGSLDEHIVIGSGGSGQVYKVALTNGSTIAVKKLWPEVSNNRKSFDLEKVWSEDVFDAEVEILGNIRHKNIVKLLCCCSNGVSKLLVYEYMPNGSLGDMLHDSRSALLDWPTRYKIALDVAEGLSYLHHDCVPPIVHRDIKSNNILLDADFGAMIADFGIAMAVDVSEVKSMSVVTGSYGYIAPEYAYSSKVNEKGDIFSYGMVILELITGRRPTDPEFEENGLVKWVCNSLEKEGMKHIVDPKLDWCCMEEMLKVLNIGLQCSSPQPVYRPAMRRVVKLLEEVRMDSHPMNGGREGRLKAYCLDDVSDSENVV 999
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8390120 8393119 + CmaCh03G012910.1 Cma03g01291 290862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01291 999 ProSitePatterns Protein kinases ATP-binding region signature. 695 718 IPR017441 GO:0005524
Cma03g01291 999 Gene3D Transferase(Phosphotransferase) domain 1 776 981 - -
Cma03g01291 999 Gene3D Ribonuclease Inhibitor 275 614 IPR032675 -
Cma03g01291 999 ProSitePatterns Serine/Threonine protein kinases active-site signature. 820 832 IPR008271 GO:0004672|GO:0006468
Cma03g01291 999 Pfam Leucine rich repeat N-terminal domain 20 59 IPR013210 -
Cma03g01291 999 Pfam Protein kinase domain 694 903 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g01291 999 Gene3D Ribonuclease Inhibitor 172 274 IPR032675 -
Cma03g01291 999 Pfam Leucine rich repeat 495 554 IPR001611 GO:0005515
Cma03g01291 999 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 9 979 - -
Cma03g01291 999 Gene3D Phosphorylase Kinase; domain 1 670 775 - -
Cma03g01291 999 Gene3D Ribonuclease Inhibitor 19 171 IPR032675 -
Cma03g01291 999 Pfam Leucine Rich repeats (2 copies) 110 147 IPR025875 -
Cma03g01291 999 SUPERFAMILY RNI-like 306 584 - -
Cma03g01291 999 ProSiteProfiles Protein kinase domain profile. 689 977 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g01291 999 Pfam Leucine Rich Repeat 208 229 IPR001611 GO:0005515
Cma03g01291 999 Pfam Leucine Rich Repeat 352 371 IPR001611 GO:0005515
Cma03g01291 999 SUPERFAMILY Protein kinase-like (PK-like) 680 967 IPR011009 -
Cma03g01291 999 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 9 979 - -
Cma03g01291 999 SMART serkin_6 689 942 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g01291 999 SMART LRR_typ_2 541 564 IPR003591 -
Cma03g01291 999 SMART LRR_typ_2 206 230 IPR003591 -
Cma03g01291 999 SMART LRR_typ_2 85 109 IPR003591 -
Cma03g01291 999 SMART LRR_typ_2 565 587 IPR003591 -
Cma03g01291 999 SMART LRR_typ_2 278 302 IPR003591 -
Cma03g01291 999 SMART LRR_typ_2 133 156 IPR003591 -
Cma03g01291 999 SUPERFAMILY L domain-like 45 297 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g01291 Cma13g00622 CCT
Cma03g01291 Cma18g00392 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01291 Cma-Chr3:8390120 Cma11g01798 Cma-Chr11:12031664 0 dispersed
Cma19g00514 Cma-Chr19:6033034 Cma03g01291 Cma-Chr3:8390120 1.11E-16 dispersed
Cma13g00622 Cma-Chr13:5990548 Cma03g01291 Cma-Chr3:8390120 0 wgd
Cma18g00392 Cma-Chr18:2147366 Cma03g01291 Cma-Chr3:8390120 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68441 PF00069 Pkinase 8.30E-42 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01291 - - csv:101223091 1409.05