Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01298 ATGGGTGCTCTCATCGATCTTAATACCACTGAAGAAGATGAATCTCCCTCTTCTGCTGCTTCCTCTGTTTCTTCTTCCTCTGCTTCTGCTCTAACCTCCTCTCCTTCGCCTTCTCTTACCTCTTCCATTTGCTTGGAGCTATGGCATGCTTGTGCTGGACCTCTCACCTCTTTGCCCAAGAAAGGGAACTTGGTTGTCTACTTGCCGCAGGGTCACTTGGAGCAGATGCAAGAATTTCCGGCTACGCCCTCTGATCTCCCTCCCCACATCCTCTGTCGCGTCATTGATGTTCAGCTTCACCAGGCTGAGGCTGGGAGTGACGAGGTTTATGCTCAGGTTTCATTGCTTCCTGAAAACGAGCAAATGGAGCACAAGATGCAGGAAGAGATGAGCAATGACATTGAGGAGGAGGATGTTGAAGAAGGTGAGAAGACCACAACACCTCACATGTTCTGCAAGACCCTTACTGCTTCAGACACTAGTACTCATGGAGGATTCTCCGTCCCCAGGCGTGCAGCGGAGGATTGCTTCCCGCCATTGGATTATAATCAACAGAGGCCTTCACAAGAGCTTGTTGCAAAGGATCTCCTTGGGCTAAAATGGAAGTTCAGGCACATATATCGTGGGCAGCCTAGAAGGCATTTGCTAACCACTGGATGGAGTGCATTTGTGAACAAGAAGAGGCTTGTTTCTGGTGATGCAGTGCTTTTTCTTAGGGGAAACGATGGTGAATTAAGACTGGGAATACGAAGAGCTGCACAGCTTAAAAGTGGTTCTACATTTTCTAATATTTGCAGTCAGAAGCTCAACTCTAGTAGTATCATGGATGTGGTTAATGCTATATCTTCCAAAAGTTCCTTCAGCGTATGCTACAATCCTAGGGCTACCTCTTCACAGTTTGTCTTGCCTTTTCATAAGTTCTTGAAGAGCATGAACCGTTCCTTCTCTGTTGGAACAAGGTTTAGGCTGAGTTTCGAAACCGAAGATGCTGCTGATCTGAGACACACTGGACATATAACTGGAATTGGCGATGTTGATCCTATCGGATGGCCGGGATCACGGTGGAGGTCCCTTATGGTGAGGTGGGACGATGGCGAAATCAACAGGCATGGCAGGGTTTCGCCTTGGGAGATCGAGCCCTCTGGTTCTGTTTCTATGTCTAGCAACTTGGTTCCACCTGGTCTGAAAAGATCCAGGATTGGACTCCCTTCCACAAAACTAGAGTTTCCAGTTCCACATGGGATTGGAGCAACAGACTTTGGTGAATCTTTAAGGTTCCATAAGGTCTTGCAAGGTCAAGAAATTTTAGGCTACAATACTCCCACTGACTGTGATGACAACACCCGTTATCATCCACCTCAGAAGAGGAGATCGTTGCCTGACTTACATGGTTCTGGTATAGCTCTGATGAGAAATGGTCCCAGAAACCGACTTATCAACTCCGAAACTTCCTCACGGGGTTTCGTGTTTGATGAATCCTTCCAATTCCAAAAGGTCTTGCAAGGTCAAGAAATATTTCCAGGTCCCTTTTATGGTAGGGCCATGGCCACCAATGAAGTTAAGGAAAGTGGTGGTTGCGGTCCTGTCGATGGTTTTCGATTGTCTACGACTAGAGATGGATGGCCCACGGCAATGCAATGTGAAAATTTCCACACACGCTCTTCCATTCCTTCTGCTCAAGTCTCTTCACCATCTTCTGTATTCATGTTTCAGCAGTCAATGGTTCCTGTCCTATGCTTTGATTCACATAACCGTGGGATTATGAACAAAAGTACATCCCATAATTCTGGGACAGCATTTATGACCGACAATAGCATGTGTCCCACTTCATTGGGCGAGCTGAATCTGCTGGGCCTATCCCATCATTCTACAACAACAGCTTCAGCGTTTTCGGGCACTAAAGATCTGTCTTCAACTACCAAAGCTGGCTGCAGATTGTTTGGGTTTTCATTGACAGAGGAAAAGAATGTTGGGAATACAGACAAGGGTTCTCCAGCAACAACTCCCATTCATGCAGGAACCACCATTGGAGCTCAATGTCCTTTGAAGTCTCCTCTGATGAGCAAGGTGGTTGGAAGCAACTGTACCAAAGGGGCTCTTCAGTACCACTATGCAAATTACAGTACCTACTACTGA 2136 46.72 MGALIDLNTTEEDESPSSAASSVSSSSASALTSSPSPSLTSSICLELWHACAGPLTSLPKKGNLVVYLPQGHLEQMQEFPATPSDLPPHILCRVIDVQLHQAEAGSDEVYAQVSLLPENEQMEHKMQEEMSNDIEEEDVEEGEKTTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYNQQRPSQELVAKDLLGLKWKFRHIYRGQPRRHLLTTGWSAFVNKKRLVSGDAVLFLRGNDGELRLGIRRAAQLKSGSTFSNICSQKLNSSSIMDVVNAISSKSSFSVCYNPRATSSQFVLPFHKFLKSMNRSFSVGTRFRLSFETEDAADLRHTGHITGIGDVDPIGWPGSRWRSLMVRWDDGEINRHGRVSPWEIEPSGSVSMSSNLVPPGLKRSRIGLPSTKLEFPVPHGIGATDFGESLRFHKVLQGQEILGYNTPTDCDDNTRYHPPQKRRSLPDLHGSGIALMRNGPRNRLINSETSSRGFVFDESFQFQKVLQGQEIFPGPFYGRAMATNEVKESGGCGPVDGFRLSTTRDGWPTAMQCENFHTRSSIPSAQVSSPSSVFMFQQSMVPVLCFDSHNRGIMNKSTSHNSGTAFMTDNSMCPTSLGELNLLGLSHHSTTTASAFSGTKDLSSTTKAGCRLFGFSLTEEKNVGNTDKGSPATTPIHAGTTIGAQCPLKSPLMSKVVGSNCTKGALQYHYANYSTYY 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8415430 8419539 - CmaCh03G012980.1 Cma03g01298 290869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01298 711 MobiDBLite consensus disorder prediction 10 36 - -
Cma03g01298 711 Gene3D - 149 253 IPR015300 -
Cma03g01298 711 SMART B3_2 151 253 IPR003340 GO:0003677
Cma03g01298 711 Gene3D - 314 388 - -
Cma03g01298 711 MobiDBLite consensus disorder prediction 1 36 - -
Cma03g01298 711 CDD B3_DNA 149 251 IPR003340 GO:0003677
Cma03g01298 711 Pfam B3 DNA binding domain 151 252 IPR003340 GO:0003677
Cma03g01298 711 ProSiteProfiles B3 DNA-binding domain profile. 151 253 IPR003340 GO:0003677
Cma03g01298 711 Pfam Auxin response factor 278 358 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cma03g01298 711 PANTHER AUXIN RESPONSE FACTOR 3 34 702 - -
Cma03g01298 711 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 34 702 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cma03g01298 711 SUPERFAMILY DNA-binding pseudobarrel domain 146 259 IPR015300 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g01298 Cma07g00214 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01298 Cma-Chr3:8415430 Cma20g00475 Cma-Chr20:2288731 5.34E-138 dispersed
Cma03g01298 Cma-Chr3:8415430 Cma07g00214 Cma-Chr7:992555 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34705 PF02362 B3 1.60E-21 CL0405 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01298 K14486 - csv:101220018 1170.22