Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g01299 ATGGTCCTCCCGTTACTGAAGCTCGGAACGCTAGCGTTGAAAACTCTGAGCAAGCCACTCGGTAACAGGCTCAAGAAGCAAGCTGCGTTGCACCCCAGATTTAGGCAGTTCATCATTAATGTCGCCCAGAGTAACCATCGGATGTCAACTCAAATGCAAAGACGCATATATAGTCATGCCACTGATGTAGAAATTCGCCCTCTGGATGAGGAGAAAGCAGTTCAAGCTGCCGTTGACCTGATTGGCGAACTTTTTGTCTTCTCGGTAGCAGGAGTAATAGTGATATTTGAGGTTCAGAGAAGTGCTAGATCAGAAGCCAGAAAAGAAGATGTACGCAGGCAAGAAATGGAGGCACTGAGGCAAAGAGACGAAAGCTTATTAGTAGAAATGGAACTTCTGAAGCATAAACTTGTAGAATTGGAAGAACATGCCAGAGGACGAGGTCTTGGTGGTATCTTGAACTTCAAACATGCTCATTCAGAAAGTGGGAATTCAGCAAAGCCCGCTTGA 510 45.69 MVLPLLKLGTLALKTLSKPLGNRLKKQAALHPRFRQFIINVAQSNHRMSTQMQRRIYSHATDVEIRPLDEEKAVQAAVDLIGELFVFSVAGVIVIFEVQRSARSEARKEDVRRQEMEALRQRDESLLVEMELLKHKLVELEEHARGRGLGGILNFKHAHSESGNSAKPA 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8424969 8428071 + CmaCh03G012990.1 Cma03g01299 290870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g01299 169 Pfam Optic atrophy 3 protein (OPA3) 6 126 IPR010754 -
Cma03g01299 169 Coils Coil 116 136 - -
Cma03g01299 169 PANTHER OPTIC ATROPHY 3 PROTEIN OPA3 1 168 IPR010754 -
Cma03g01299 169 PANTHER OPTIC ATROPHY 3 PROTEIN 1 168 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g01299 Cma07g00212 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma19g00900 Cma-Chr19:8192287 Cma03g01299 Cma-Chr3:8424969 1.98E-80 transposed
Cma03g01299 Cma-Chr3:8424969 Cma07g00212 Cma-Chr7:978085 4.00E-90 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g01299 K23166 - csv:101219777 281.952